CI01000057_03857470_03880767 (DAZAP1)


Basic Information

Item Value
gene id CI01000057_03857470_03880767
gene name DAZAP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 3857470 ~ 3880879 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_03857470_03880767.mRNA
CCAAGTGGACTCCATTTCCCAACATGCTGTGCTGTCATTGCACCGCCCTTGCTGGGGCGCCCCGTGGATCGCGTCAGTGTTGCGCAGATTCGGTTTGAACCGAAAGCGGAGTGTGACCTTCCCGGGCGGCGGAGACCGGCAGGAGACCGAGCGAGAGGACCCATGTCAGCACTCCCGTCCACAACCCTCGCCACAGAGATGAACAGCAACTTAGCTGGAGATGAAATCGGGAAGCTGTTTGTGGGTGGATTGGATTGGAGCACCACCCAGGAGACTTTACGAAACTACTTTTCTCAGTATGGAGAGGTTGTGGATTGCGTCATCATGAAAGATAAAAGCACAAATCAGTCCAGGGGCTTCGGCTTTGTGAAGTTTAAAGACCCCAACTGCGTACGGACTGTCCTGGACACCAAACCTCATAACCTGGATGGAAGAAATATCGACCCCAAGCCTTGTACGCCTAGAGGTATGCAGCCCGAGAAGACTCGAGCAAAAGATGGCTGGAAAGGAAGCAAAAGTGACAGCAATAAATCTAAGAAGATATTTGTGGGTGGAATTCCTCATAATTGCGGTGAAGCTGAACTCAGGGATTATTTCAACAGATTTGGAGTGGTCACAGAGGTGGTAATGATCTATGACGCAGAGAAACAGAGGCCTCGAGGTAAACCACACATTCATATTTGCTCCCATTCAGTCTCTCTCTCACCTCATGCGCAAGACAAACTATTCCAACCCAAAGAGAAGAGAACATCACGCAGGCCATCCGTCCCTCTCATGTGTGCGATGCTTGGTTTGGATACAGTACAGATAGTGGCACCACACAGATTAAGGCCTGGTGTGAAACACACTCATGCCTGTTTCTCTGGTGTAAACACGGTTAATGCTTCAGTTTGTGGCGGTGGCTTATCCTCAGACAGTTTACACATTAGTTTCTCTTCACTAATACTGCATAAAACACTTCCTGTTAAGAGATTCAGTGTGGCAGATGTTCTCTGTTTGCGTTTCGCTCTTCTTAATAGCATAATTACACACTGTCTAGCTGTTAAAGGCATAAAGGCGGCTGTTCTGTCCCAACACCCTGCTGCTCTGTTGACTTTTGGTCGTTGGCTAGGTTTTGGATTTATTACTTTCGAGGCCGAACAATCAGTGGACCAGGCTGTCAACATGCATTTTCACGACATCATGGGCAAAAAAGTTGAAGTGAAGAAGGCGGAGCCACGGGACAGCAAAGCTCCCGCCCCTGGTCAGCTGGGAGCCAATCAGTGGGGGCACCGGGCCATCTTAAGCGCAGCCAATGGCTGGGCAGCACAACCGGCTCCGAGCTGGCAGCAGAGCTACGGGCCTCAGGGTGTTTGGGTGACTACAGGACAACCTCTTGGTGGGTATGGACCTCCTTTACCTGCTGGCCGTGGGGCACCTGCACAACCTCCTTCTCCATTTAATGCATTTCTAGTTGCAGCGGCACCTACAGGGGGATTTGGGGCACCTCAGGGATACCCCCAACAGGGCTTTAGCGCACAACCTCAGTTTGGATATAGCTTTGGAACACCTCAAGGTGACCAGTTTGTAGCACAGGGAATGCCTCCCCCTCCCAACACGCCGGGCGCAGGGCCTTTAGGTTTTGCCCCGGCTACGACTCCCTCTCAGGACCTGAGCAAAGCCGCCCCAGCACAGCCAGACTTCTCCTACAGCCAGTATGGCTTGGGTAACTATCCTCAGGACCCCTCTGCCTACGGACCAACGCGTCCTTCTCACACTTATGTACAGGAAGAGCAGGGATATAGCGCAGGTTATGGGCAGGACCTGAGTGCTTTTGGTCATAGCTTTGCAGACCCCAGCCAGCAAACTGCCTCATACGCTGCAGCCCCCTCCGCACCCTCGTCAGGAGCTCAACCGGCAGCCAGCAGCTTCGGACGAGGACAGAACCACAATGTACAGGGCTTCCACCCCTACCGGCGCTGAGCTGACCCCTCCCACCCCCACCCCAATGCAATACTCATCGTCAGGGATATAGACGTTTTGAGCGCAAGCTGAACTGGATTTTGGGATTGTCTTTCTGAACATTGCAGAGTAA

Function

symbol description
dazap1 Predicted to enable mRNA 3'-UTR binding activity; poly(G) binding activity; and poly(U) RNA binding activity. Predicted to be involved in positive regulation of mRNA splicing, via spliceosome and spermatogenesis. Is expressed in Purkinje cell. Orthologous to human DAZAP1 (DAZ associated protein 1).

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14411 MSI; RNA-binding protein Musashi

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_03857470_03880767.mRNA True 2074 mRNA 0.52 14 3857470 3880879

Neighbor

gene id symbol gene type direction distance location
CI01000057_03842028_03844033 NDUFS7.S, MGC85267, NDUFS7 coding upstream 13311 3842028 ~ 3844691 (+)
CI01000057_03817584_03827165 CTDSPL3 coding upstream 30305 3817026 ~ 3827165 (+)
CI01000057_03790271_03807327 ARID3A coding upstream 50143 3790189 ~ 3807327 (+)
CI01000057_03752329_03758938 R3HDM4 coding upstream 98361 3751404 ~ 3759109 (+)
CI01000057_03719251_03750681 NA coding upstream 106669 3719251 ~ 3750801 (+)
CI01000057_03943917_03961522 GTPBP3 coding downstream 63038 3943917 ~ 3961537 (+)
CI01000057_03973241_03985010 USHBP1 coding downstream 92362 3973241 ~ 3985057 (+)
CI01000057_03999611_04005699 NR2F6, NR2F6A, NR2F6B coding downstream 118732 3999611 ~ 4007102 (+)
CI01000057_04008460_04012934 TAX1BP3.S, TAX1BP3, MGC83163 coding downstream 127311 4008190 ~ 4012975 (+)
CI01000057_04029208_04038844 SLC1A6 coding downstream 148329 4029208 ~ 4038910 (+)
G245346 NA non-coding upstream 5528 3849171 ~ 3851942 (+)
G245341 NA non-coding upstream 9055 3847303 ~ 3848415 (+)
G245357 NA non-coding upstream 41111 3815633 ~ 3816359 (+)
G245430 NA non-coding upstream 92845 3764311 ~ 3764625 (+)
G245349 NA non-coding upstream 149022 3707828 ~ 3708448 (+)
G245439 NA non-coding downstream 17445 3898324 ~ 3898641 (+)
G245359 NA non-coding downstream 18641 3899520 ~ 3907602 (+)
G245441 NA non-coding downstream 30712 3911591 ~ 3918597 (+)
G245444 NA non-coding downstream 38926 3919805 ~ 3926305 (+)
G245493 NA non-coding downstream 88911 3969790 ~ 3970069 (+)
G245401 NA other upstream 319028 3537569 ~ 3538442 (+)
G245231 NA other upstream 564908 3087096 ~ 3292562 (+)
G243991 NA other upstream 1204910 2635237 ~ 2652560 (+)
G243975 NA other upstream 1280618 2576453 ~ 2576852 (+)
G245486 NA other downstream 329018 4209897 ~ 4212081 (+)
G245725 NA other downstream 1217806 5098685 ~ 5103606 (+)
CI01000057_05564489_05579041 NA other downstream 1693025 5564489 ~ 5579843 (+)
G245856 NA other downstream 1756775 5637654 ~ 5643340 (+)
G245857 NA other downstream 1774397 5655276 ~ 5657239 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00006078 NA coding CM030142.1 CM030142.1 15402929 ~ 15430407 (+)