CI01000057_03973241_03985010 (USHBP1)


Basic Information

Item Value
gene id CI01000057_03973241_03985010
gene name USHBP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 3973241 ~ 3985057 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_03973241_03985010.mRNA
TAAAGACTGGTTTTGCACATTATTTCACATAAGTGACACGTTCCAGCAGAGATCGGACAGTCTGGTGTCAGCGGACTCGGAACTGGCGCAGTGTGAGACGGAGGTGCTGGAGGAGATGGAGAGTGATTTGGGGATCTCATACCCCTCTGCTCTGCCCCCTGATGAGAGACGTCAGTATCAGCGGGATGTTCTCTCACTGTACAAACACAACCAAGACCTCAACACCTCCTTGAAGAGCCGTCAGGAAGAGCTTATAGATGCTGAAGGAATGCTGATGGATCTTGAGGACGAGAAAAAGTGGCTACAGGAAAAGTTAGTGGACCTGAAGAGGAAGTGGCTGTTCGGAGTGAGTCGTTCTCCTCCTGTTAGTCCATCATTGTCCTCTAGTCGAACTTCGAGCCCTTGCTTTTCCTCTCCTCCATATCCTGGATCCCCTCTGCTGTCCCGCAAACTACCTGGCTCCAGGCCGGATTCCCCTTCATCTCCCTGCACCGTTGACTCTGTGCTTCAGGCTGAGATCGAAAAGCAGCAGAGGTGTCTGGAGCGACTGAAAGCTCGGAATGAGCGTCTGAATGCCGCACTGGTCAGGAGGAAAGGAGAATCAGAGCAGCTGAGCATGAATCTCAGCCGACAGGAGGCAGACAGCTCGGCTCTACACATGGCTCTGGCATACTGTGAGGAGTGTGAGGAGGCTTACAGTGACCTACTATCCCTGTGCGAAGCCAGAAAACAACAGTATGCAGAAAACATGAGCACACCCCAGCCTGACCTCTCAAAGTTAATGGAAGAGAACTCAGACAAAGGCGAGTCATCCTCCAGTCCACCAGAGGGCACTACTGAGACTAGACCAAACAGCTTGTCGGAGCAGGAGTTTAAGGGCAAGGCTGGTGTAATTCTCCAGAGGATCGCCAGGCTAAAGCAGGACAGGGCCGCTATGTGTATCCCGCAGCGGGGCAAATCAGGAGAGGGAAAGATCAGTCCCGACACTGGCACGCTTGCAGGGGTCAGAGGTCGCACCAGTTCACTTTCCAAAAACACCAAAGAGGAGAAAGCGGCTCTATTATATGAGTTGGTGACAGTCAGGGAGGAGATGTCAGAGATGCGTGGAAATCTCCGGCTCCTGGAAAAAGAGCGGCGGTGTTTGGACCTGGTGCTGATGGTCCAGAGTGCCCAAGACTCTGCTGGTGCTCTGATCCTGGACAGTCTGCGAGATGAGCTGGGCGAGAGAAGAGCCACCCAGCAGAGAATTGCTGAAAATCTGGCAAAAATAGAAGCTGGAGAGGGAATTCCCGGTCCTCGCAATCACTCTATCCTAAGAGAACTACAAGCGGCATTGCAAAGGGAGCAATCACTGAGGAAGAGAGTGGCGGCTTTACGCGAGTCACTGGACTCAGCGCTCACAGACAGCACCACTCAGAGGACGATCAACAGAGAAGAGATTGCACGTCTCTCCCGCTACTACAAGTAACCCAAACCACATGAACTTTACATCACAACACTATCATTAGCATAATA

Function

symbol description
ushbp1 Orthologous to human USHBP1 (USH1 protein network component harmonin binding protein 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_03973241_03985010.mRNA True 1515 mRNA 0.52 10 3973241 3985057

Neighbor

gene id symbol gene type direction distance location
CI01000057_03943917_03961522 GTPBP3 coding upstream 11704 3943917 ~ 3961537 (+)
CI01000057_03857470_03880767 DAZAP1 coding upstream 92362 3857470 ~ 3880879 (+)
CI01000057_03842028_03844033 NDUFS7.S, MGC85267, NDUFS7 coding upstream 129082 3842028 ~ 3844691 (+)
CI01000057_03817584_03827165 CTDSPL3 coding upstream 146076 3817026 ~ 3827165 (+)
CI01000057_03790271_03807327 ARID3A coding upstream 165914 3790189 ~ 3807327 (+)
CI01000057_03999611_04005699 NR2F6, NR2F6A, NR2F6B coding downstream 14554 3999611 ~ 4007102 (+)
CI01000057_04008460_04012934 TAX1BP3.S, TAX1BP3, MGC83163 coding downstream 23133 4008190 ~ 4012975 (+)
CI01000057_04029208_04038844 SLC1A6 coding downstream 44151 4029208 ~ 4038910 (+)
CI01000057_04088057_04092278 CTNS coding downstream 103000 4088057 ~ 4092278 (+)
CI01000057_04105710_04123101 RANBP3A, RANBP3 coding downstream 120653 4105710 ~ 4123718 (+)
G245493 NA non-coding upstream 3172 3969790 ~ 3970069 (+)
G245444 NA non-coding upstream 46936 3919805 ~ 3926305 (+)
G245441 NA non-coding upstream 54644 3911591 ~ 3918597 (+)
G245359 NA non-coding upstream 65639 3899520 ~ 3907602 (+)
G245439 NA non-coding upstream 74600 3898324 ~ 3898641 (+)
G245513 NA non-coding downstream 56130 4041187 ~ 4041489 (+)
G245519 NA non-coding downstream 75145 4060202 ~ 4060588 (+)
G245526 NA non-coding downstream 156094 4141151 ~ 4142227 (+)
G245539 NA non-coding downstream 170740 4155797 ~ 4161350 (+)
G245550 NA non-coding downstream 215181 4200238 ~ 4200458 (+)
G245401 NA other upstream 434799 3537569 ~ 3538442 (+)
G245231 NA other upstream 680679 3087096 ~ 3292562 (+)
G243991 NA other upstream 1320681 2635237 ~ 2652560 (+)
G243975 NA other upstream 1396389 2576453 ~ 2576852 (+)
G245486 NA other downstream 224840 4209897 ~ 4212081 (+)
G245725 NA other downstream 1113628 5098685 ~ 5103606 (+)
CI01000057_05564489_05579041 NA other downstream 1588847 5564489 ~ 5579843 (+)
G245856 NA other downstream 1652597 5637654 ~ 5643340 (+)
G245857 NA other downstream 1670219 5655276 ~ 5657239 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003190 ushbp1 coding NC_007122.7 CM002895.2 6076646 ~ 6101104 (+)