CI01000057_03790271_03807327 (ARID3A)


Basic Information

Item Value
gene id CI01000057_03790271_03807327
gene name ARID3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 3790189 ~ 3807327 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_03790271_03807327.mRNA
TTATAAAAAGCAGTCCCGTTTGTTTTCGGGTGAGGGGGGAAGTGAAGGGGCCAGAATCCCAGCTTGTCCTGTTTCCCAGGCAATGAAGCTGCAGGCGGTGATGGAGAACCTGCACAGACAGCAGAGAGCCAAACTGCTGATGGAGCAGGCGGGGCAATCACACAGCCCCGCCCCCATGGGGGAGGAGCTTAAATCAATCTCTGCCTCTGATACAGAGCAGGCGCAGATGGCGGCGCTAGCAGCAATGCGCGCAGTAGCAGCTGGACTTCAGAGGGCCGACAGCCCCATAAAACAGAAATGGGATGAAGATGACTTTGAGGGTGAGATGGAGGAAGACTATGATGACGATCTAGGTGACGAAGGGCTGCCGTCGGGCCGTGAGGCCGTCGCCCCAGGCAGAGGCATCCTCCTCTTACCCCATCGCCATTTACACCCTCACTCCCAGCTGCTAAAGGCTCGGCCTGGTTCTGAAACAGAACCGCGAGCGTTGACTCACTCCGCTCATTCATCCCATGGGCCGCTCCATGGGCAGGACCACGCAGACTGGACCTATGAAGAGCAGTTCAGACAGACGCCCCCTGCCCCCCTCAGCCCACTGACCGAATACAGAGCTCTCTGTGCTGCTATAATGAGAGCTCAGGAACAGGGGAAGAAAGCGAGAAGGGAAGGACAGAGAAAAAATGAGCAATTTAATGCTGGCCGTTGCTCAGCTACCATCACTGTTTTTCTGGCTCTCTATGAACTGGACAGTGACCCAAATAGGAAGGAGTTCCTGGACAATCTGTTCAGCTTTATGCAGAAGAGAGGGACGCCAGTGAACAGGATTCCCATCATGGCCAAGCAGGTGCTAGACCTCTACATGCTGTACCAACTGGTGACAGAGAAGGGGGGGCTGGTGGAGGTCATAAATAAAAAGTTGTGGAGGGAGATCACGAAGGGCCTGAACTTGCCAACCTCCATCACAAGCGCTGCCTTCACTCTCAGAACACAATATATGAAGTATCTGTATCCTTATGAATGCGATAAGAGGGGTCTCAGCAATCCAAACGAGCTGCAGGCTGCCATCGACAGTAACCGGCGAGAGGGACGCAGGCAAGGTTTTGGCAGCTCGCTCTTCACCTATTCGCCCAATGGAACACCCACCATGCTCTCCTCTCCCAAACTCTCCATGCCACCAATGGGCATCGCCCTGCCCAGCAACGGAGCCTCCGTCTTATCCTTACAGAAAATTAAAAAAGAGGATGACGGGATTCAGACTCGTCTGCCAGCGTCTCTGGCCACTCAGACAGTAGCTGCGGCCCAGGCTGCGGCTGCACAGGCCACCATCGCACAGGTAGCTGCACTGGAGCAGCTGCGGGACAAGCTGGAGTCCGGCGAGCCCCCGGAGAAGAAGATTGCACTACCACTGGAGGAACACCAGCGGCTACTGCAGAGAGCCCTGCAGCAAAACCTGCTGGCCATGACGGCACAGATCCCCATGAACATTCGCATCAACAATCAAGGTACTGACACTTTAACATTCTGGGCTCTAGACAAGTATATCAGTCTGATACATGATCAGTATATCCAGACCAAATCTATCG

Function

symbol description
arid3a Predicted to enable DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ARID3A (AT-rich interaction domain 3A).

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_03790271_03807327.mRNA True 1583 mRNA 0.55 7 3790189 3807327

Neighbor

gene id symbol gene type direction distance location
CI01000057_03752329_03758938 R3HDM4 coding upstream 31080 3751404 ~ 3759109 (+)
CI01000057_03719251_03750681 NA coding upstream 39388 3719251 ~ 3750801 (+)
CI01000057_03709399_03714556 NA coding upstream 75630 3708944 ~ 3714559 (+)
CI01000057_03692584_03701758 NA coding upstream 88157 3692584 ~ 3702032 (+)
CI01000057_03669937_03677055 SLC35E1 coding upstream 112308 3669410 ~ 3677881 (+)
CI01000057_03817584_03827165 CTDSPL3 coding downstream 9699 3817026 ~ 3827165 (+)
CI01000057_03842028_03844033 NDUFS7.S, MGC85267, NDUFS7 coding downstream 34701 3842028 ~ 3844691 (+)
CI01000057_03857470_03880767 DAZAP1 coding downstream 50143 3857470 ~ 3880879 (+)
CI01000057_03943917_03961522 GTPBP3 coding downstream 136590 3943917 ~ 3961537 (+)
CI01000057_03973241_03985010 USHBP1 coding downstream 165914 3973241 ~ 3985057 (+)
G245430 NA non-coding upstream 25564 3764311 ~ 3764625 (+)
G245349 NA non-coding upstream 81741 3707828 ~ 3708448 (+)
G245358 NA non-coding upstream 83335 3706357 ~ 3706854 (+)
G245428 NA non-coding upstream 106835 3683154 ~ 3683354 (+)
G245360 NA non-coding upstream 437593 3337261 ~ 3352596 (+)
G245357 NA non-coding downstream 8306 3815633 ~ 3816359 (+)
G245341 NA non-coding downstream 39976 3847303 ~ 3848415 (+)
G245346 NA non-coding downstream 41844 3849171 ~ 3851942 (+)
G245439 NA non-coding downstream 90997 3898324 ~ 3898641 (+)
G245359 NA non-coding downstream 92193 3899520 ~ 3907602 (+)
G245401 NA other upstream 251747 3537569 ~ 3538442 (+)
G245231 NA other upstream 497627 3087096 ~ 3292562 (+)
G243991 NA other upstream 1137629 2635237 ~ 2652560 (+)
G243975 NA other upstream 1213337 2576453 ~ 2576852 (+)
CI01000057_02395285_02396439 NA other upstream 1393707 2394598 ~ 2396561 (+)
G245486 NA other downstream 402570 4209897 ~ 4212081 (+)
G245725 NA other downstream 1291358 5098685 ~ 5103606 (+)
CI01000057_05564489_05579041 NA other downstream 1766577 5564489 ~ 5579843 (+)
G245856 NA other downstream 1830327 5637654 ~ 5643340 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003182 arid3a coding NC_007122.7 CM002895.2 5681762 ~ 5810958 (+)
bowfin (Amia calva) AMCG00006052 NA coding CM030142.1 CM030142.1 15328797 ~ 15356105 (+)