Gene
RNA
| Item | Value |
|---|---|
| gene id | G245341 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000057 |
| NCBI id | null |
| chromosome length | 6014843 |
| location | 3847303 ~ 3848415 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU278502 | True | 1012 | lncRNA | 0.38 | 2 | 3847303 | 3848415 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000057_03842028_03844033 | NDUFS7.S, MGC85267, NDUFS7 | coding | upstream | 3144 | 3842028 ~ 3844691 (+) |
| CI01000057_03817584_03827165 | CTDSPL3 | coding | upstream | 20138 | 3817026 ~ 3827165 (+) |
| CI01000057_03790271_03807327 | ARID3A | coding | upstream | 39976 | 3790189 ~ 3807327 (+) |
| CI01000057_03752329_03758938 | R3HDM4 | coding | upstream | 88194 | 3751404 ~ 3759109 (+) |
| CI01000057_03719251_03750681 | NA | coding | upstream | 96502 | 3719251 ~ 3750801 (+) |
| CI01000057_03857470_03880767 | DAZAP1 | coding | downstream | 9055 | 3857470 ~ 3880879 (+) |
| CI01000057_03943917_03961522 | GTPBP3 | coding | downstream | 95502 | 3943917 ~ 3961537 (+) |
| CI01000057_03973241_03985010 | USHBP1 | coding | downstream | 124826 | 3973241 ~ 3985057 (+) |
| CI01000057_03999611_04005699 | NR2F6, NR2F6A, NR2F6B | coding | downstream | 151196 | 3999611 ~ 4007102 (+) |
| CI01000057_04008460_04012934 | TAX1BP3.S, TAX1BP3, MGC83163 | coding | downstream | 159775 | 4008190 ~ 4012975 (+) |
| G245357 | NA | non-coding | upstream | 30944 | 3815633 ~ 3816359 (+) |
| G245430 | NA | non-coding | upstream | 82678 | 3764311 ~ 3764625 (+) |
| G245349 | NA | non-coding | upstream | 138855 | 3707828 ~ 3708448 (+) |
| G245358 | NA | non-coding | upstream | 140449 | 3706357 ~ 3706854 (+) |
| G245428 | NA | non-coding | upstream | 163949 | 3683154 ~ 3683354 (+) |
| G245346 | NA | non-coding | downstream | 756 | 3849171 ~ 3851942 (+) |
| G245439 | NA | non-coding | downstream | 49909 | 3898324 ~ 3898641 (+) |
| G245359 | NA | non-coding | downstream | 51105 | 3899520 ~ 3907602 (+) |
| G245441 | NA | non-coding | downstream | 63176 | 3911591 ~ 3918597 (+) |
| G245444 | NA | non-coding | downstream | 71390 | 3919805 ~ 3926305 (+) |
| G245401 | NA | other | upstream | 308861 | 3537569 ~ 3538442 (+) |
| G245231 | NA | other | upstream | 554741 | 3087096 ~ 3292562 (+) |
| G243991 | NA | other | upstream | 1194743 | 2635237 ~ 2652560 (+) |
| G243975 | NA | other | upstream | 1270451 | 2576453 ~ 2576852 (+) |
| G245486 | NA | other | downstream | 361482 | 4209897 ~ 4212081 (+) |
| G245725 | NA | other | downstream | 1250270 | 5098685 ~ 5103606 (+) |
| CI01000057_05564489_05579041 | NA | other | downstream | 1725489 | 5564489 ~ 5579843 (+) |
| G245856 | NA | other | downstream | 1789239 | 5637654 ~ 5643340 (+) |
| G245857 | NA | other | downstream | 1806861 | 5655276 ~ 5657239 (+) |
