G678637


Basic Information

Item Value
gene id G678637
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1149551 ~ 1155672 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU799296
GGTTAGTACAGACTAGGTCACGAACAGATGATTAAGATGTGGACTTACTTTAGACGTTGCCTCTTTGATGGACAAACTCAGCGTTCGCTCCTGCTCCTGAAGTCTGAAAGACAAGCTGATCAGCGGCCGATGTTCAGAGGCGATCATGTCGTCCAGCGCTCGACCCGTCAGACGCAGCTGAGCCGAATCACAGGCTCTCAGGACGGGCCCCTCGAGCTCCTCCACCTCCAGCTGCACCTCCACAGCTCTGCTCTGCTCCTGCAGCTCCTCCAGCCGCCGCTGAAGCTCACACATCTCCTTCTCTTCTCCCGTGTTTGAGGTCGAATCTGAGAGCTGCTTGATCCCTGATCGTCACTCACTTCACCATTTTGCCTGTTTGAAAACATGTGTTTATAATCACCCGTATGATTAGAAACGTCTTGTTATCGTTAACTAAAACCATTTAAAATAATGTTTGGTAACTGAAATAAAGCTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU799296 True 476 TUCP 0.50 3 1149551 1155672

Neighbor

gene id symbol gene type direction distance location
CI01180000_00955725_01050852 SIPA1L2 coding upstream 97725 954922 ~ 1051826 (+)
CI01180000_00947514_00949868 NA coding upstream 198645 946421 ~ 950906 (+)
CI01180000_00862066_00867985 NA coding upstream 281439 860746 ~ 868112 (+)
CI01180000_00812535_00858607 NA coding upstream 290546 811857 ~ 859005 (+)
CI01180000_00765917_00776252 NA coding upstream 372640 765797 ~ 776911 (+)
CI01180000_01196818_01224406 EGLN1B, EGLN1, EGLN1A coding downstream 41114 1196786 ~ 1224915 (+)
CI01180000_01372608_01374455 NA coding downstream 215089 1370761 ~ 1374547 (+)
CI01180000_01380859_01385445 NA coding downstream 225029 1380701 ~ 1385783 (+)
CI01180000_01492241_01493781 NA coding downstream 335999 1491671 ~ 1494446 (+)
CI01180000_01542059_01545609 GGPS1 coding downstream 386387 1542059 ~ 1546080 (+)
G678775 NA non-coding upstream 22941 1125938 ~ 1126610 (+)
G678773 NA non-coding upstream 30906 1118289 ~ 1118645 (+)
G678641 NA non-coding upstream 33059 1111203 ~ 1116492 (+)
G678649 NA non-coding upstream 58700 1040385 ~ 1090851 (+)
G678639 NA non-coding upstream 242169 902610 ~ 907382 (+)
G678631 NA non-coding downstream 650 1156322 ~ 1159139 (+)
G678646 NA non-coding downstream 17963 1173635 ~ 1177276 (+)
G678819 NA non-coding downstream 83135 1238807 ~ 1239064 (+)
G678820 NA non-coding downstream 83905 1239577 ~ 1239963 (+)
G678826 NA non-coding downstream 92036 1247708 ~ 1247959 (+)
G678751 NA other upstream 83460 1059843 ~ 1066091 (+)
G678440 NA other upstream 997899 147934 ~ 151652 (+)
G678946 NA other downstream 362681 1518353 ~ 1612547 (+)
G679076 NA other downstream 639498 1795170 ~ 1799433 (+)
G679324 NA other downstream 1233195 2388867 ~ 2397360 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other downstream 1534090 2689271 ~ 2693221 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other downstream 2397605 3569165 ~ 3573135 (+)

Expression


Co-expression Network