G678631


Basic Information

Item Value
gene id G678631
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1156322 ~ 1159139 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU799288
GTATATATAAAAATAAAAGCCAATTCAAAATATAAATAAATACTATAATAGCACATAAATAATATTAAAATAACACTAAATCTGTGTCACTTCTAATCAGTGTCTCAATGATTATAGTGAATTAATTTTTTTTTTACAGCTGGTTAAATATATTATGAATTTACGCGTGACCTTTCCAACATGATTATGTAATGCGTGGCGTATCACAAAGCAGTGCAAGACGAGCATTTGTGGTTAAAAAGTATATAATTTTTTATTTTTTTTAGAAAATGTCCGATGGTTTCTCTAGATAAGACTCTTATTCCTCGTCTGGGATCGTGTGGAGCTCTTTGAAGCTGCACTGAAACTGACATTTGGACCTTCAACCCGTTGAACCCCAGTGAAGTCCACTATATGGAGAAAAATCCTGGAATGTTTTCCTCAAAAACCTTCATTTCTTTTCGACTGAAGAAAGAAAGACATGAACATCTTGGATGACATGGAGTCCACGTCTGTCCTGCGGAGGGCGCTGTGCACGGCTGTCCTGAGACGCTCCAGAAATCCAGTGACCTCAGGATGTCTGGACGGGAGACCAGGCTTAAGTGTCGCTCTCTCTTTCCGCAGTTCCTCCAATTTCTTCCCAAAGCGCTCGGCTGAACACACAAACACTATTTAGACTTGTCTTTCTTTGACGGAGTAAAGCTCAAGCCAAACACAAATGTACACCTGTTTCCGGTCAATTTAGGTCAAACTCAATACAAAAACATTATAAAAATGCTAAATTCATCCTGCGTCAAAATAAATATTCATAACAAACACAGACAGATTTATCGGCTAATATATCGGTTATCGGCTTTCAAATATAAAGAATTATCGGTTATCGGTATCGGCCAAAATTTTCATATCGGTGCATCTCTAATTATTTTATGTTGCTTTATATTATGTATGATATGTATGTACTTTGTACAGCACTTTGGTCAGCTTAGCCATGTTTAGAAATGCTATATAAATAAATTCTATTTACTTGCTATTTAATTTTAAAAACAGCCAAATACCATCATTTAAATCGACGCTGCAGGAAATGTCTGTGTTTGAGAGTATAAGACAGCATAAAACAAACACAACTGACCCACTTTACACACACACACACACACACACAGAGATCAGGGTCTGGGAAAAGTCCAGTTATGTAAGTCACAAGGTTTGTTGGGCTCTAAAGAGGGGAAAAAGGCTTCCAGCTGACAAATGTAGGTCAATCATCTGATCAAATTGAAGAAGTAGTTTTACAAGATCACATGGTGAAGATGTAGAGGGACTCTTTTGGGTAACTAATGAAGTAAGAGATATAGAAATTAAGACTATTTTCTTTCCATAATAAAATAAAACCATACAAGTCATGTCTCCATGAAAAGCACACTGGTACTGCATGATGACCAGCAGATGGCGCTGTTTGACAATGAATCACAGAACTGTCTGAAAGTTATGGACTATTAATAATGTACTACATACTGTACAGTAAATACAGTGTACTGTCTAATACTGTTTAAAAATAGCATGTGAAACAGCACACATGCAAGATAAAGATTTATTTTCCCAGCATTAAAGTCAATCATGATTCATGAGGGCCTATTTCATTATAACTTTTATTATTACATTATATACGATTCAGAGTAAAAAATAACATATTAAGCTTACACTGTAAGAAACAAAACAGAATTAAATGGTTAAATCACAGTTATTTGTGTGACAATTAATCGCAAGCACAAACTTCATGTGACAGGCGTAAATATTCTTGCTCTCAAGTGAGCAATCACAAGTTAATGTGTTTGGTCTGGTTTGAGGTCATCATTGCTGAGTATGGACAATCAGCCGGGAGTGTTTGGGTGTGTTAACACGCCACATAAATGTGTTGAAACTGTTTTTGTCTTCTGTCATCAGCTGTGGACTTATTTGGACATAAACTGGGCTGAAATTCACAGATACTTTATGGAGTAGGAACATCCTTTAAGATTAAAATGTGAAGCAATGACAAGTTCTTTTTGATGGTGCATTAAAGGTGCAGTTCACAATTTCTGAGAATCATTGTTGAACACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU799288 True 2074 lncRNA 0.36 2 1156322 1159139

Neighbor

gene id symbol gene type direction distance location
CI01180000_00955725_01050852 SIPA1L2 coding upstream 104496 954922 ~ 1051826 (+)
CI01180000_00947514_00949868 NA coding upstream 205416 946421 ~ 950906 (+)
CI01180000_00862066_00867985 NA coding upstream 288210 860746 ~ 868112 (+)
CI01180000_00812535_00858607 NA coding upstream 297317 811857 ~ 859005 (+)
CI01180000_00765917_00776252 NA coding upstream 379411 765797 ~ 776911 (+)
CI01180000_01196818_01224406 EGLN1B, EGLN1, EGLN1A coding downstream 37647 1196786 ~ 1224915 (+)
CI01180000_01372608_01374455 NA coding downstream 211622 1370761 ~ 1374547 (+)
CI01180000_01380859_01385445 NA coding downstream 221562 1380701 ~ 1385783 (+)
CI01180000_01492241_01493781 NA coding downstream 332532 1491671 ~ 1494446 (+)
CI01180000_01542059_01545609 GGPS1 coding downstream 382920 1542059 ~ 1546080 (+)
G678775 NA non-coding upstream 29712 1125938 ~ 1126610 (+)
G678773 NA non-coding upstream 37677 1118289 ~ 1118645 (+)
G678641 NA non-coding upstream 39830 1111203 ~ 1116492 (+)
G678649 NA non-coding upstream 65471 1040385 ~ 1090851 (+)
G678639 NA non-coding upstream 248940 902610 ~ 907382 (+)
G678646 NA non-coding downstream 14496 1173635 ~ 1177276 (+)
G678819 NA non-coding downstream 79668 1238807 ~ 1239064 (+)
G678820 NA non-coding downstream 80438 1239577 ~ 1239963 (+)
G678826 NA non-coding downstream 88569 1247708 ~ 1247959 (+)
G678827 NA non-coding downstream 89007 1248146 ~ 1248444 (+)
G678637 NA other upstream 650 1149551 ~ 1155672 (+)
G678751 NA other upstream 90231 1059843 ~ 1066091 (+)
G678440 NA other upstream 1004670 147934 ~ 151652 (+)
G678946 NA other downstream 359214 1518353 ~ 1612547 (+)
G679076 NA other downstream 636031 1795170 ~ 1799433 (+)
G679324 NA other downstream 1229728 2388867 ~ 2397360 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other downstream 1530623 2689271 ~ 2693221 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other downstream 2394138 3569165 ~ 3573135 (+)

Expression


Co-expression Network