G53382 (cpa1)


Basic Information

Item Value
gene id G53382
gene name cpa1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49224538 ~ 49226884 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU59599
cttatGTTACTAAAGTCCTTTATTTTTGACACACAAGttcaaatatgttttttcatATACAGTTTGTACCTCTCCACGAGAGATTACTCCAACCATTACAACCTTTATCTCTGCTTCATTTTGCCATCACCTAAAGAGCTTGGCAAAGTGTTAAAAATGAAATAGACAAAATCAGGTATAACAGTTGACATTTATTGATCTCTTTCTGGCCTGGAAATAACCATGGTAGACTTAATGGTACATCTAGGCTTTTCCTATATATGTACAACAGTACAATGACAGTGTCCTGTTGGTTGTCGTGGTGACCCATCTAGTTGGTGTTGTCCTTGGTATGCTCCATGATGGCCATCAGAGCCAGCCAAGTCTCCTTGGCAGTAGGAAGGATCTGATTAGCTGGCAGGATGAAACCATAGCGACCGGTGTCTCTCAGCTCAAAGGTGTAGGAGTACTTGATGCCCTGGTTGTAGGTCCAATCAATGGTACCACCACTAGCCTGATCTGGAATTGACAAGAAAAAAGGGAATTGACAATAGTTAATGTCACAGAGTATATAACAGCATTGTTTATATTATTCAGATGGAGTGTGCTCATGTTGATAGACCGTGGTGGACTAGAGTGTACTGGAATGGCACGCGATGGGATCCATTTAGAGCAATTAATAGGTTAAGCCAGTGTTTGACACTTACAGATGGTGTTGATTATGCTGCCGTATCTGTAGGAGGTTCCGTACAGGGAAGCCAGATCAGTGATAGCCTTCCTGGCCAGGTTGTGCTGTGGGCAGATAATAAAAGTAACCTAACTAGTACCCTGTTGGAGCCTCAATTCCCCTGGTGAGGCCACATGTAGTGGAGAATGCAGGCAGGGTGCCGCCTATAGGCACGGATGCCACAAGTTGTTACCAAACATGTCAAAGACAACTAGTTGATGGATGCTGAACTCACCAGTTCGCTCTCGTCCTTGCAGGGGGTCCTGGTGTAACCATAGGGATAGAGGAGCATCTGGGAATAGGAATGGATGGACACGAAAGCCTGCAGGTTGCCATGAGACTTGACAAAGTCCACGATGGACTTGACCTCAGACTCAGAGTGAGCCTTGGGTCCACGGTAAGTCTCAGAGCAGGGGCTGTCACTGGCACCGGGACCTACCAAAGATAACAGAGGAGATAGACAAAAGGACAAAAGTATAAAAGAGATTAGTGCCAGACTAAAAAATAACAATGCACATTTTCCACAGTAAAATACTGTCTCACCAGGTGCAAGGAGATACCTCTTTATTTGACAAGAAAATGTAGATTTGGTCTCTTATTGAGTTTGTGACATCTGAATCTTTTGTATTTGAGTGAACATTTAAGTGAACTGGAAAATATACCTCCAAAACCAGCATCCCAGTTTCTGTTGGGGTCAGTTCCAATGCAGGAAGAGCCAGGGTTGGGCTTCCTGGTCTTACGCCACATACGGTTCTTGTGGGTGTAGTAGTAGCCATCAGGGTTGGTCACAATCTCCAGGAAGATGTCCATCTTGTCCAGGATGGCGGTGAGGGCGGCGTCACGTCCGTAGTCGGTCACAATCTGGACATGGAAACAGAAAGATGATATCATAAATCTTACATGATGACTGCCCATACATAGTGAGTAATAGTGGGAGTGATACAGTGGTTTGGTGAACAGATGCGTAGATGAAGAGAGGGGAAAGGTTTAAAGACTGTCAGTGAGTTAGCGCTGATGCACCTTCTTTGCGAACCAGGTGCCGCTAGCCTGTGTCACCCATTCCCTGGAGTGGATTCCAGTGTCAAGCCAGATACCAGGTTTGTTGGTTCCACCAGTGCTAAACT

Function

symbol description
cpa1 Predicted to enable metallocarboxypeptidase activity. Predicted to be involved in proteolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in pancreas. Orthologous to human CPA1 (carboxypeptidase A1).

NR:

description
carboxypeptidase A1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59599 True 1830 lncRNA 0.38 2 49224538 49226884

Neighbor

gene id symbol gene type direction distance location
LOC110524349 LOC106573123 coding upstream 409525 48804907 ~ 48815013 (+)
LOC110532376 NA coding upstream 426034 48759039 ~ 48798504 (+)
cttnbp2 cttnbp2 coding upstream 517969 48635495 ~ 48706569 (+)
LOC110524313 LOC106573128 coding upstream 627930 48591020 ~ 48596608 (+)
LOC110524302 LOC106573126 coding upstream 633624 48552081 ~ 48590914 (+)
LOC110524405 LOC106573116 coding downstream 208878 49435762 ~ 49440232 (+)
kitlg scf coding downstream 439648 49666532 ~ 49702958 (+)
LOC110524421 NA coding downstream 597026 49823910 ~ 49834003 (+)
LOC118964840 NA coding downstream 620736 49847620 ~ 49848979 (+)
LOC118964841 NA coding downstream 810639 50037523 ~ 50184257 (+)
G53352 NA non-coding upstream 49942 49174386 ~ 49174596 (+)
G53349 NA non-coding upstream 53989 49170341 ~ 49170549 (+)
G53318 NA non-coding upstream 116677 49107505 ~ 49107861 (+)
G53308 NA non-coding upstream 134186 49090120 ~ 49090352 (+)
G53252 NA non-coding upstream 144805 49065694 ~ 49079733 (+)
G53654 NA non-coding downstream 55570 49282454 ~ 49282965 (+)
G53659 NA non-coding downstream 58395 49285279 ~ 49285543 (+)
G53678 NA non-coding downstream 73736 49300620 ~ 49300869 (+)
G53785 NA non-coding downstream 157693 49384577 ~ 49384906 (+)
G53790 NA non-coding downstream 166967 49393851 ~ 49394069 (+)
G53181 NA other upstream 330626 48893497 ~ 48893912 (+)
G52324 NA other upstream 841281 48380542 ~ 48383257 (+)
G52080 NA other upstream 1199580 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 1965640 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 2363074 46854230 ~ 46861465 (+)
LOC110524575 fgf3 other downstream 2222938 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 4439331 53632830 ~ 53705421 (+)
G59031 NA other downstream 4761256 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 4817965 54044813 ~ 54089850 (+)

Expression


Co-expression Network