RNA id: TU59599


Basic Information

Item Value
RNA id TU59599
length 1830
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G53382
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49224538 ~ 49226884 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttatGTTACTAAAGTCCTTTATTTTTGACACACAAGttcaaatatgttttttcatATACAGTTTGTACCTCTCCACGAGAGATTACTCCAACCATTACAACCTTTATCTCTGCTTCATTTTGCCATCACCTAAAGAGCTTGGCAAAGTGTTAAAAATGAAATAGACAAAATCAGGTATAACAGTTGACATTTATTGATCTCTTTCTGGCCTGGAAATAACCATGGTAGACTTAATGGTACATCTAGGCTTTTCCTATATATGTACAACAGTACAATGACAGTGTCCTGTTGGTTGTCGTGGTGACCCATCTAGTTGGTGTTGTCCTTGGTATGCTCCATGATGGCCATCAGAGCCAGCCAAGTCTCCTTGGCAGTAGGAAGGATCTGATTAGCTGGCAGGATGAAACCATAGCGACCGGTGTCTCTCAGCTCAAAGGTGTAGGAGTACTTGATGCCCTGGTTGTAGGTCCAATCAATGGTACCACCACTAGCCTGATCTGGAATTGACAAGAAAAAAGGGAATTGACAATAGTTAATGTCACAGAGTATATAACAGCATTGTTTATATTATTCAGATGGAGTGTGCTCATGTTGATAGACCGTGGTGGACTAGAGTGTACTGGAATGGCACGCGATGGGATCCATTTAGAGCAATTAATAGGTTAAGCCAGTGTTTGACACTTACAGATGGTGTTGATTATGCTGCCGTATCTGTAGGAGGTTCCGTACAGGGAAGCCAGATCAGTGATAGCCTTCCTGGCCAGGTTGTGCTGTGGGCAGATAATAAAAGTAACCTAACTAGTACCCTGTTGGAGCCTCAATTCCCCTGGTGAGGCCACATGTAGTGGAGAATGCAGGCAGGGTGCCGCCTATAGGCACGGATGCCACAAGTTGTTACCAAACATGTCAAAGACAACTAGTTGATGGATGCTGAACTCACCAGTTCGCTCTCGTCCTTGCAGGGGGTCCTGGTGTAACCATAGGGATAGAGGAGCATCTGGGAATAGGAATGGATGGACACGAAAGCCTGCAGGTTGCCATGAGACTTGACAAAGTCCACGATGGACTTGACCTCAGACTCAGAGTGAGCCTTGGGTCCACGGTAAGTCTCAGAGCAGGGGCTGTCACTGGCACCGGGACCTACCAAAGATAACAGAGGAGATAGACAAAAGGACAAAAGTATAAAAGAGATTAGTGCCAGACTAAAAAATAACAATGCACATTTTCCACAGTAAAATACTGTCTCACCAGGTGCAAGGAGATACCTCTTTATTTGACAAGAAAATGTAGATTTGGTCTCTTATTGAGTTTGTGACATCTGAATCTTTTGTATTTGAGTGAACATTTAAGTGAACTGGAAAATATACCTCCAAAACCAGCATCCCAGTTTCTGTTGGGGTCAGTTCCAATGCAGGAAGAGCCAGGGTTGGGCTTCCTGGTCTTACGCCACATACGGTTCTTGTGGGTGTAGTAGTAGCCATCAGGGTTGGTCACAATCTCCAGGAAGATGTCCATCTTGTCCAGGATGGCGGTGAGGGCGGCGTCACGTCCGTAGTCGGTCACAATCTGGACATGGAAACAGAAAGATGATATCATAAATCTTACATGATGACTGCCCATACATAGTGAGTAATAGTGGGAGTGATACAGTGGTTTGGTGAACAGATGCGTAGATGAAGAGAGGGGAAAGGTTTAAAGACTGTCAGTGAGTTAGCGCTGATGCACCTTCTTTGCGAACCAGGTGCCGCTAGCCTGTGTCACCCATTCCCTGGAGTGGATTCCAGTGTCAAGCCAGATACCAGGTTTGTTGGTTCCACCAGTGCTAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59565 lncRNA upstream 49942 49174386 ~ 49174596 (+) True G53352
TU59562 lncRNA upstream 53989 49170341 ~ 49170549 (+) True G53349
TU59531 lncRNA upstream 116677 49107505 ~ 49107861 (+) True G53318
TU59521 lncRNA upstream 134186 49090120 ~ 49090352 (+) True G53308
TU59463 lncRNA upstream 144805 49065694 ~ 49079733 (+) True G53252
TU59881 lncRNA downstream 55570 49282454 ~ 49282965 (+) True G53654
TU59886 lncRNA downstream 58395 49285279 ~ 49285543 (+) True G53659
TU59905 lncRNA downstream 73736 49300620 ~ 49300869 (+) True G53678
TU60013 lncRNA downstream 157693 49384577 ~ 49384906 (+) True G53785
TU60018 lncRNA downstream 166967 49393851 ~ 49394069 (+) True G53790
XM_021603917.2 mRNA upstream 409525 48804907 ~ 48815013 (+) False LOC110524349
XM_021603926.2 mRNA upstream 409525 48804908 ~ 48815013 (+) True LOC110524349
LOC110532376 mRNA upstream 426034 48759039 ~ 48798504 (+) True LOC110532376
XM_036979261.1 mRNA upstream 517969 48635499 ~ 48706569 (+) True cttnbp2
XR_005051992.1 mRNA upstream 519442 48635495 ~ 48705096 (+) False cttnbp2
XM_021604008.2 mRNA downstream 208878 49435762 ~ 49440232 (+) True LOC110524405
XM_021578809.2 mRNA downstream 439648 49666532 ~ 49702958 (+) False kitlg
NM_001281361.1 mRNA downstream 439660 49666544 ~ 49700375 (+) True kitlg
XR_005052015.1 mRNA downstream 597026 49823910 ~ 49834003 (+) False LOC110524421
XR_005052016.1 mRNA downstream 597032 49823916 ~ 49834003 (+) False LOC110524421
TU59387 other upstream 330626 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 841281 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 1199580 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 1965640 47227246 ~ 47258898 (+) True LOC110520864
TU56623 other upstream 2363074 46857908 ~ 46861464 (+) True LOC110524042
TU60888 other downstream 810690 50037574 ~ 50083996 (+) True LOC118964841
TU62774 other downstream 2222938 51449822 ~ 51450935 (+) True LOC110524575
TU65446 other downstream 4439331 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 4761256 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 4817965 54044849 ~ 54062254 (+) False LOC110525327

Expression Profile