syngr3a (syngr3,LOC108236246,LOC106516511)


Basic Information

Item Value
gene id syngr3a
gene name syngr3,LOC108236246,LOC106516511
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 6723383 ~ 6733204 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825480.1
GCGCGCTGGACCCGTCCatacagcagagagcagcagcgCATCCATCCTGCCGTGGAGCCGGGAGCGTGGAGCCGCGAGAAGcgcacagagaaagagagagagagagagagagagagagagagagagagagagagagagcgacagaaGATGGACGGAGTGGGATCGTTCGGAGCTGGCCGGGCCGGGTCCACTATCGACCCGATTGCCTTCGCCAAACAGCCGCAGACCATCCTCAGAGTGCTGTCCTGGATATTTTCCCTGGTGGTCTTCGCCTCCATCGTGAACGAGGGTTATGTCAACATGGGCAGCGAGCGTCTCCACTGCGTCTTCAATAAGAACGCAGACGCGTGCAACTACGGCGTGTTCGTGGGCCTGGTGGGCTTGATGGCGTGCTCCTTCTTCTTCCTGCTCGACTACAAGTTCTCCTCCATCAGCTCCGTCAAAGACAGGAAGAAGGCTATAATGCTTGAGATCGGCTTCTCGGGCTTCTGGGCCTTCCTGTACTTTGTAAGTTTCTGCTTCCTGGCCAATCAGTGGTCTCGAACCACGGCTGATGAGCTGCCACTCAACCAGGGGGCAGATGCAGCCCGGGCTGCAATcgccttctctttcttctccatAATCACCTGGGCTGGTTTAACAGTGCGTGCGGTCCAGAAGTATCTGCTCGGCACAGACATGACTCTGTTCACCACGGAGCACATGGATGGCGGCGCGCCCACCCAGCCGTACCCCTCCAACTCACCGGTTGGCGGCACCACTGAGACCACAGAGACCTACCAGAGCCCACCATTCACCGAGAACAACGCAGCACCCACATACCAGGTTCCCATTTACTAGATAAGATAGACCTGATGGTGGACGAATAAGGTCCCAGAGATGGGTAAGAGGAAAGTGATAGAAAATTGCTTTCTGTGATGTTACACCTGCAGTTGTTTATGTGTTGATCTGGGCGGAGTTTTCAACAATTgtttcaagaaaaaaacaaaaaagaactgCCTCTTCTTTTTGTTCCCTCCTCTTGTTCCCTTTACCTTCCTTAACATTCCagctttatctttatcttttctCGACCTGTATGTTAAATTCAATTCCCTGCTTTCGCAAATCCAGTGTTCCTCGGATCAGAACAgatgaaagaaaaaggaaacaaaaggaGGAAATGTAAAAAGAGGAGGCCACTTTGCAGTATTTAAACACTATGTTGACAACCAAACAGATGAAGGGATCAACAAGCGAGCGACTCCACCACAAAGCAGTATCGGCAAACAAATAGTGCAGAGGGCACTCGCATACAGCACCTTCATCTTGTTCTTTCTATTCATCGAAGTGTCAAAATCCCCTTTCATGccagggaattttttttttttagctacagTACGGTCTAGTCGTTCCTCCCACTTTCCCTGCTGCAGTTAAAAGTGACCATGTGTGTTGAATCTGCATGTTTCTTAACTTAGAGATCAACTAAGTGccatactgtactgtgtgtcTCAGACAGTGACTTAATTTAGTAGATTTCCAcatgctgtaaaaaaaacaacgtttTTGTGACTAAGTGCAATATCTCACACGTAGGTCTCTAGGTAGGTAGATACCGTCCTGTAGGTAGGTTAGTTAGCGTCAGATAAGACCAGTTGAGGCACTGTCTCAAATAACATACTAGTCTTTGAATTGTACTTACAAATCTCAGGCAAATGTCCACATTATAATCGTTGATCTGACGTTGATTCCGCTTCCCTGCAAAGTTTGCAAGATACGGAAATGATATCTGAATCTGACAGATCCTGAGAGAACTTTTCATCCACAAAAAACTTGTTGACAATTTGAATAGATTTAGTATCGGTCAACAAGCTGTTACGTCATCTTTTCAAGCATTTATGGTCTTCCTCGGTGTAGTGCAATCATtactttaaacacatttttaggAGGAAAACCGTGTCAAATATGCCAAATATTCCTTGAGTATTTGTATACGAGGGTCATTTTTCCAGGTTTATCACTCTTAAGATTCACTGGGGAAACCCTTATCACTtttcagtctgtttttttttttatctctgtgcCAGGCATGGATGGATTATTGAGTGGGCCTTTTGCGGCACAGGCCCGAGGGGTCAGGGGGCCCCCTGGACCAGAGCCTCTTTCTGAAgtgatttttaaatatttattgttGGAAAGTCGATCAAACGACTACAAGGACACACAAAACGACCACAAAGAAGAGGGCAAAAGAGccgcaaagagacacaaacagctacaaagagacacacaatggccgcaaagagatgcaaaaaagAAACTATAAAGCGACACAAAATGACTATAAAGAGACTTAAAACTAcatagagacaaaaaaaaaaaaaa

Function

symbol description
syngr3 Predicted to enable SH2 domain binding activity and protein N-terminus binding activity. Involved in substantia nigra development. Predicted to be located in synaptic vesicle. Predicted to be active in neuromuscular junction and synaptic vesicle membrane.

NR:

description
PREDICTED: synaptogyrin-3

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825480.1 True 2367 mRNA 0.46 4 6723383 6733204

Neighbor

gene id symbol gene type direction distance location
gfer gfer coding upstream 2812 6718979 ~ 6720571 (+)
flii flii coding upstream 121410 6585961 ~ 6601973 (+)
LOC120574685 LOC103361811,LOC106920476,LOC102795685 coding upstream 182647 6431422 ~ 6540736 (+)
LOC120574286 NA coding upstream 335019 6351622 ~ 6388364 (+)
LOC120574282 NA coding upstream 381680 6333512 ~ 6341703 (+)
slc2a6 slc2a6,LOC107376396 coding downstream 104710 6837914 ~ 6843759 (+)
si:ch211-157c3.4 LOC102792881 coding downstream 117041 6850245 ~ 6856719 (+)
c15h16orf72 c17h16orf72,LOC104917635,LOC103362395,LOC102775918 coding downstream 160012 6893216 ~ 6901069 (+)
ndufab1b ndufab1 coding downstream 176594 6909798 ~ 6913521 (+)
socs1a socs1,LOC100174889 coding downstream 469544 7202748 ~ 7205210 (+)
G152525 NA non-coding upstream 74049 6648730 ~ 6649334 (+)
G152502 NA non-coding upstream 294077 6427923 ~ 6429306 (+)
LOC120574684 NA non-coding upstream 312419 6402320 ~ 6410964 (+)
G152480 NA non-coding upstream 333087 6389776 ~ 6390296 (+)
G152486 NA non-coding upstream 349829 6373329 ~ 6373554 (+)
G152578 rpusd1 non-coding downstream 24161 6757365 ~ 6759943 (+)
G152589 NA non-coding downstream 79482 6812686 ~ 6814832 (+)
G152586 NA non-coding downstream 123613 6856817 ~ 6857260 (+)
G152585 NA non-coding downstream 127841 6861045 ~ 6864240 (+)
G152613 NA non-coding downstream 169724 6902928 ~ 6903241 (+)
chst12a chst12,LOC103360067,LOC100699819,LOC101072910 other upstream 766066 5950424 ~ 5957317 (+)
G152149 actb,LOC107581721,LOC102799139 other upstream 951516 5725886 ~ 5771867 (+)
slc29a4 slc29a4,LOC107104199,LOC107105090 other upstream 1076193 5626207 ~ 5647190 (+)
G152125 NA other upstream 1172837 5533856 ~ 5550546 (+)
rbx1 rbx1 other upstream 1259080 5461939 ~ 5464303 (+)
dexi dexi,LOC107590611 other downstream 536924 7270128 ~ 7274611 (+)
emp2 emp2 other downstream 606781 7339985 ~ 7356838 (+)
G152892 NA other downstream 1394061 8127265 ~ 8127981 (+)
mcrip1 mcrip1 other downstream 1712216 8445420 ~ 8449305 (+)
mapk3 mapk3,LOC104942729 other downstream 1933266 8666470 ~ 8684765 (+)

Expression


Co-expression Network