si:ch211-157c3.4 (LOC102792881)


Basic Information

Item Value
gene id si:ch211-157c3.4
gene name LOC102792881
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 6850245 ~ 6856719 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039824309.1
AGATGAGACAGGTGGATGTCACAGTTACAGTCTGTCTGGACTCTACATCAGCAACATCTTACACACACATCCCTGCATACAGACTGCGACAGCCCGCCAAGcacaaTGAGTTCGTCTGGAAAAAAAGAACCTCCTCCCTACATCATACCAGTCGATGGTCAGGGTCAGAAGGATGTGACAGTTTACCACGTCCACACTCCATTCAACCCTCCGTCCAATTCAGACAGCGCCGCTAATTCCACGCCAGTGTACACCAGCGGAGGAGGCGGCGCTGGCTCAGGTCTCCCATCTGGAGATGGCAAAACTAGGTTTGTGAGCTACGACGGAGCGCTGGGGCATTCTGCCGGCATGACCACCTGCACCTCCTGCCAGCAGCAGGTCATGACCAACGTCACCTACAAGGCCGGGACGTACGCTTGGCTGATGTGCTTACTCTTCATCTGCTGCGGGTTAGTCCTTTGCTGCTGTCTGATTCCTTTCTTCCTGAAAAGCTTCAAGGATGCGTACCACACGTGCCCCCGCTGCAACAGAGTGCTCTACGTTGACAAGAAGAAATGCTGTAAATGACGAACATGAGGGCGGAAATGGAcccataaaaatataatataacatcTTGTTAACTTTCTCTTATTAGTTGCATCATTGTTAAGAAGCAAACTGACAGAGAAAGGTCACAGTTATaatgtagtttatttttatGGATGAGCCATTGCATTTgcacaaaaacatcatattaTCAGCAATAAACTGGGAGTAATTGTGTTGTCAGAGCTTAAAGGCACAATATGTAATGTTTTAACAatgtatagactaatacaaaagtTATCCATCAGAAACACTGCCCTCTGCctgtatttcctttttttctttttcttttgatcaATCAGGGTGTTTTGGGGGTGTAACCCCCAGCCAATAACAATGCAGAGCTTATGCAGCCCTCTCATTCCCAACCGCCACTTCGCCCGTCAGCGTCTCATATCTAGAGGCCCCCAGGAAGGGCCCCtggctttgaagcaaattgaacaTAGTGGCCAAACAGTGAAAGTACATCTCCCTGCCCGTCACGTGATGCCCTCTGGCCAAAAAAGACTTTTTCCCACAGACCTCAATGTCGAACGAGGCGTCTCATTACATGTTCTGCCTTTAAATATCATGTGCACACTTATTTTTAAAGCTCTGGCAAGTTAAATCAAGCACTTCCCATGCACTTTTTGGgagcagttttatttttgtcccattccagcagaaaaataaatctttttctATCATCCTTTTGAGAAACTtctgcatacagtatgttgttaaAATAAAGGCTTGTAAATAAACTCTATCAAATAC

Function

NR:

description
PREDICTED: lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039824309.1 True 1341 mRNA 0.45 5 6850245 6856719

Neighbor

gene id symbol gene type direction distance location
slc2a6 slc2a6,LOC107376396 coding upstream 6486 6837914 ~ 6843759 (+)
syngr3a syngr3,LOC108236246,LOC106516511 coding upstream 117041 6723383 ~ 6733204 (+)
gfer gfer coding upstream 129674 6718979 ~ 6720571 (+)
flii flii coding upstream 248272 6585961 ~ 6601973 (+)
LOC120574685 LOC103361811,LOC106920476,LOC102795685 coding upstream 309509 6431422 ~ 6540736 (+)
c15h16orf72 c17h16orf72,LOC104917635,LOC103362395,LOC102775918 coding downstream 36497 6893216 ~ 6901069 (+)
ndufab1b ndufab1 coding downstream 53079 6909798 ~ 6913521 (+)
socs1a socs1,LOC100174889 coding downstream 346029 7202748 ~ 7205210 (+)
atf7ip2 NA coding downstream 500784 7357503 ~ 7369880 (+)
b9d1 b9d1 coding downstream 1072200 7928919 ~ 7933457 (+)
G152589 NA non-coding upstream 35413 6812686 ~ 6814832 (+)
G152578 rpusd1 non-coding upstream 90302 6757365 ~ 6759943 (+)
G152525 NA non-coding upstream 200911 6648730 ~ 6649334 (+)
G152502 NA non-coding upstream 420939 6427923 ~ 6429306 (+)
LOC120574684 NA non-coding upstream 439281 6402320 ~ 6410964 (+)
G152586 NA non-coding downstream 98 6856817 ~ 6857260 (+)
G152585 NA non-coding downstream 4326 6861045 ~ 6864240 (+)
G152613 NA non-coding downstream 46209 6902928 ~ 6903241 (+)
G152618 NA non-coding downstream 58872 6915591 ~ 6919778 (+)
G152635 cacng3,LOC104955459,LOC106516519 non-coding downstream 159011 7015730 ~ 7024650 (+)
chst12a chst12,LOC103360067,LOC100699819,LOC101072910 other upstream 892928 5950424 ~ 5957317 (+)
G152149 actb,LOC107581721,LOC102799139 other upstream 1078378 5725886 ~ 5771867 (+)
slc29a4 slc29a4,LOC107104199,LOC107105090 other upstream 1203055 5626207 ~ 5647190 (+)
G152125 NA other upstream 1299699 5533856 ~ 5550546 (+)
rbx1 rbx1 other upstream 1385942 5461939 ~ 5464303 (+)
dexi dexi,LOC107590611 other downstream 413409 7270128 ~ 7274611 (+)
emp2 emp2 other downstream 483266 7339985 ~ 7356838 (+)
G152892 NA other downstream 1270546 8127265 ~ 8127981 (+)
mcrip1 mcrip1 other downstream 1588701 8445420 ~ 8449305 (+)
mapk3 mapk3,LOC104942729 other downstream 1809751 8666470 ~ 8684765 (+)

Expression


Co-expression Network