socs1a (socs1,LOC100174889)


Basic Information

Item Value
gene id socs1a
gene name socs1,LOC100174889
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 7202748 ~ 7205210 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039826093.1
CCAAACCGGGCGGAGCTAACGGGCCCGGAGCTATAAAGTCACTGAGTGTTTACCACgctagcgcacacacacacgggagagAGAATGATTTGACGGGTGGGAATCACAGCCAGCAGGTCGACAGAGTTTTGCTTACGAGCTGTCAAAAATCGATGGTTGCCCCCACCCCCACTCTCCCCCCACAATATCACCGCGCTGCGTAACGGATTACCTGCAGGACATTATAACTGGTGGCACTTGATCGCGGTGTTTGCACAACGGATCTTTAAACAGCCGCTGTCGTTCGAACACAACGGATGTCAGTGTGGTGGTCAGAGATGGGAGAGGGTCTGGGGCCTCTCTCCCCTGTAGGATGGTAGCCGACAGCACAGTGGAAGGCCATGACAAGACCCAGTTGTCAAGCTCGTCGTCGTCACCGTCGGCGTCCTCATCGTCatccctgtcctcctcctcctcctcctcctcgtccctGTCTTCGCCGCTGGCTAGGCGCGAACTCGCTCTCAGCTCTCAGCAGTTTCAGCGTCAGGCCGCTCTAGATCTGAACCCGAGGTCGGCGTCCGTCCCTTCGGTGTATCTGACCCACTTCCCCACGTTCTCCTGCAAGGAGGACTGCAAGGTCATCACGGACACGGCGGCCAAGCTCGAGCGCAGCGCCTTCTACTGGGGTCCTCTGGGAGTGGAGGACGCCCATCGCATGCTGCGGGACGCGCCGCTGGGCAGCTTCCTCATCCGCGACAGCCGGCAGAAAGACGTCTTCTTCACGCTGTCCTACCACGGCAAGAGCGGCCCGGTCAGCGTGCGCATCGACTACAAGCGGCAGAAGTTCTCACTGGCGGGCAACGAGCGCTCCTTTCCGACGCTCTTCGCCCTCTTGGAGCATTACATCAATTCTCCCAAGAAGAGCCTGAGCGTCCCGTACAGGAAATGGAAGCCGACGCTGCAGGAGCTGTGCAGGAAGCGCATCATGGAGCTGTGTGGCGGAGTGAGCCGCGTGGCGGAGCTGCCGCTCACCCATGTCGTCCAAGACTTCCTGTTGGAATTCCCTTACAAACTATGAGCAGCATGCCGTATAAACTTTTGATagtattatttttcatttcaagAAGGCAGTTTTTACCAAGTACCGGTACACCGGAGGAGTGTTTGGTAAAACCTGCCCATCACGTGCTGGAGGTCAAGCCTGCGTCTC

Function

symbol description
socs1 Enables insulin-like growth factor receptor binding activity and protein kinase binding activity. Involved in negative regulation of tyrosine phosphorylation of STAT protein and positive regulation of regulatory T cell differentiation. Located in cytoplasmic ribonucleoprotein granule and nucleoplasm. Implicated in ovarian carcinoma; prostate cancer; and urinary bladder cancer. Biomarker of ductal carcinoma in situ; human immunodeficiency virus infectious disease; and invasive ductal carcinoma.

NR:

description
suppressor of cytokine signaling 1

GO: NA

KEGG:

id description
K04694 SOCS1, JAB; suppressor of cytokine signaling 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039826093.1 True 1192 mRNA 0.58 2 7202748 7205210

Neighbor

gene id symbol gene type direction distance location
ndufab1b ndufab1 coding upstream 289227 6909798 ~ 6913521 (+)
c15h16orf72 c17h16orf72,LOC104917635,LOC103362395,LOC102775918 coding upstream 301679 6893216 ~ 6901069 (+)
si:ch211-157c3.4 LOC102792881 coding upstream 346029 6850245 ~ 6856719 (+)
slc2a6 slc2a6,LOC107376396 coding upstream 358989 6837914 ~ 6843759 (+)
syngr3a syngr3,LOC108236246,LOC106516511 coding upstream 469544 6723383 ~ 6733204 (+)
atf7ip2 NA coding downstream 152293 7357503 ~ 7369880 (+)
b9d1 b9d1 coding downstream 723709 7928919 ~ 7933457 (+)
grapa LOC103375418,LOC100690405,LOC101484535 coding downstream 770504 7975714 ~ 8012618 (+)
LOC120574880 NA coding downstream 811786 8016996 ~ 8033015 (+)
LOC120574676 LOC100700674,LOC104966931,LOC106533983,LOC101072238,LOC103375364 coding downstream 896995 8102205 ~ 8112057 (+)
G152651 NA non-coding upstream 1895 7200625 ~ 7200853 (+)
G152645 NA non-coding upstream 122370 7075834 ~ 7080378 (+)
G152635 cacng3,LOC104955459,LOC106516519 non-coding upstream 178098 7015730 ~ 7024650 (+)
G152618 NA non-coding upstream 282970 6915591 ~ 6919778 (+)
G152613 NA non-coding upstream 299507 6902928 ~ 6903241 (+)
G152749 NA non-coding downstream 165944 7371154 ~ 7371500 (+)
G152757 NA non-coding downstream 290342 7495552 ~ 7508697 (+)
G152759 grin2a,LOC104966804,LOC102780805 non-coding downstream 364626 7569836 ~ 7575877 (+)
G152794 epn2,LOC104949517 non-coding downstream 737331 7942541 ~ 7943688 (+)
G152801 NA non-coding downstream 766873 7972083 ~ 7972360 (+)
chst12a chst12,LOC103360067,LOC100699819,LOC101072910 other upstream 1245431 5950424 ~ 5957317 (+)
G152149 actb,LOC107581721,LOC102799139 other upstream 1430881 5725886 ~ 5771867 (+)
slc29a4 slc29a4,LOC107104199,LOC107105090 other upstream 1555558 5626207 ~ 5647190 (+)
G152125 NA other upstream 1652202 5533856 ~ 5550546 (+)
rbx1 rbx1 other upstream 1738445 5461939 ~ 5464303 (+)
dexi dexi,LOC107590611 other downstream 64918 7270128 ~ 7274611 (+)
emp2 emp2 other downstream 134775 7339985 ~ 7356838 (+)
G152892 NA other downstream 922055 8127265 ~ 8127981 (+)
mcrip1 mcrip1 other downstream 1240210 8445420 ~ 8449305 (+)
mapk3 mapk3,LOC104942729 other downstream 1461260 8666470 ~ 8684765 (+)

Expression


Co-expression Network