G152578 (rpusd1)


Basic Information

Item Value
gene id G152578
gene name rpusd1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 6757365 ~ 6759943 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU206695
gtgcattagggatagctgctgtcagtgtggatggcacatctactgtaagctgttgtatcacagtgtgtgaacaagcaaacatgatcagattagctacaatataatcactttttatgcccaaatattacttgtgacccattatgaaagttgtatgaaatattcaaaggaaaaaatagatgtcattagaaagtgcaatacaatgtatcttgttctttatttaatctgtgattacttatttgcacagaaacagattctgatattgttcaacatcattgggttgttgttaagatgttaacttttctaataaatctacattgtgaagcaacttggaaatagtgatattttacaaaatacaccgaattacaaggatgtagaggacagggcgctattgcagacctataaggttttgattacatttttttaatatagtcattcgtgaagtaaagtgggccggtctaaggcatgaaaatccagggctgaaaatgagtcccaatccggccctgcCCTGAGGCCAACAGTCTCAACAGCAAACTACACATTTTATGTCATGTTCAATATTTCCAGATCAATGCAGTGTAGAGACTTTACTTATTTTAGAAGCAGAGAGATGCGCTGTTCAGTCTTGTTTTCTGTGTGATGTCAACACGTCTGTCAGATTCAATTACCACAATAGTTGTCTCATGGTGCTGCAACAGAACAAGGCGACGTCAACTTGTAATGCAGGATTGAAGCGGCACAGGTGTGCCACTGGAATAATTGTGAGCTATGTGCAGCAACAGGTAGCAGGGGCTGTGTGCCTCAGGGCTCTACAACCATATTTAGGCAGCATAATTTGTACTCCAAAGGATATTCAGTCCAAGTGGATGAAATAGTAATATTTAAGAGAGGGGGTTAATTATTATTCAACCATTTATTTAGCTTTTATATTAGTACTGAACAAAGTAATAGTACATTGTAGACATTTGTTGttacattgacattttaaaaaggtaaacagtTTGAATTAACACTGTAACGCaatcaacaaacaacaaaaggcACAGAAACATCCAGGGTAGATTCCATGTATGTTACAGGTTGCAGCGCATGTATGTAACACACATGAACTTACAGCATTTGGACATGGACAAAAAACATTTGCTGCTGCAGAGGGTCCGCAATCAGAGTTAAAAATATAATAGCTAGAATGAccgcattaaaatgtctaaaaatgactagacctatgttgtatatttgtcaagttgtgtacttacattacccaaaatgtttccaacaatatTCAAACCCAGAGATCTGTAGTTTCAATCAAGTACACGGTGCGTGTCATTTGGGTGTTTTACCGGTTTAAATCACCGGGtccatttgttttgaaaagaAGAATTCCTAACCGGGAGAAACTGACTGCAATGACAACGTTGCGCcgtcttttgttattttttgatTGATAtcccctagtggcagaaaattacatattgtatgttCATCTGACCATAGACAGCACAGACGTGTGACAAAGTCACCAATTTAAATTCTTAAGAGGGCAGGGGGGGATGTGTATTTACAATAAATTTAAGGCATCAACCCAACCCCTCACATGTCAACATAAACTTGAGCAAAGCACTTATTTCTCAGCTACTGCGGTGGAACTGCTCAGTGCCTCTGGTTGAATTATTTGAGAAAGCAGCagcacacatgctcacactgttttttttctagCATAATGTTTGTAACTGTGAGGGAATTAAGGTACTGGCTCACTTCCATGTATGCCATTTCAAAGCAAACGTGAGTGGTCAGTGAGATGGAGCATGCATGCTCAACGTGGCCTTGCTTAGTAAACaacttaaataaattaaaataatacatcaGTCTCCAGCCCATTCACTCAGCCACTGCTGACACTGCATCCTCTGCTCCTCACTCTCCTGCTCAATCCTCTGTTCCCTGCGtcctttcctcttctcctcctcccttctcgccctctctctcttctcctcttttatCTTCCTGTTTTCCTCCACCCTGTGCTCCAGCAGCGCCTCCACAGTGGCCGTCAGTGTCCGTAATGAGCGCTGTGGGAGCCACTTGGGATCCACCGCGGGGAGAAAGGGGTCTCCAGCAGAGACGAGCAGGGGCTCAGGTTCCAGGGGAATGTGGAGGAGGTGGGCGTGCAGCATCATGCGGTAGGTTGAGTCGTCCGCTCCCAAGCTGTAAGTAAAGTCCCCAACGATAGGGTGGCCTATTGCGCTGCAGTGCACCCTTAACTGGTGGGTTCGG

Function

symbol description
rpusd1 Predicted to enable pseudouridine synthase activity. Predicted to be involved in enzyme-directed rRNA pseudouridine synthesis. Predicted to act upstream of or within pseudouridine synthesis. Orthologous to human RPUSD1 (RNA pseudouridine synthase domain containing 1).

NR:

description
PREDICTED: RNA pseudouridylate synthase domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU206695 True 2277 lncRNA 0.42 2 6757365 6759943

Neighbor

gene id symbol gene type direction distance location
syngr3a syngr3,LOC108236246,LOC106516511 coding upstream 24161 6723383 ~ 6733204 (+)
gfer gfer coding upstream 36794 6718979 ~ 6720571 (+)
flii flii coding upstream 155392 6585961 ~ 6601973 (+)
LOC120574685 LOC103361811,LOC106920476,LOC102795685 coding upstream 216629 6431422 ~ 6540736 (+)
LOC120574286 NA coding upstream 369001 6351622 ~ 6388364 (+)
slc2a6 slc2a6,LOC107376396 coding downstream 77971 6837914 ~ 6843759 (+)
si:ch211-157c3.4 LOC102792881 coding downstream 90302 6850245 ~ 6856719 (+)
c15h16orf72 c17h16orf72,LOC104917635,LOC103362395,LOC102775918 coding downstream 133273 6893216 ~ 6901069 (+)
ndufab1b ndufab1 coding downstream 149855 6909798 ~ 6913521 (+)
socs1a socs1,LOC100174889 coding downstream 442805 7202748 ~ 7205210 (+)
G152525 NA non-coding upstream 108031 6648730 ~ 6649334 (+)
G152502 NA non-coding upstream 328059 6427923 ~ 6429306 (+)
LOC120574684 NA non-coding upstream 346401 6402320 ~ 6410964 (+)
G152480 NA non-coding upstream 367069 6389776 ~ 6390296 (+)
G152486 NA non-coding upstream 383811 6373329 ~ 6373554 (+)
G152589 NA non-coding downstream 52743 6812686 ~ 6814832 (+)
G152586 NA non-coding downstream 96874 6856817 ~ 6857260 (+)
G152585 NA non-coding downstream 101102 6861045 ~ 6864240 (+)
G152613 NA non-coding downstream 142985 6902928 ~ 6903241 (+)
G152618 NA non-coding downstream 155648 6915591 ~ 6919778 (+)
chst12a chst12,LOC103360067,LOC100699819,LOC101072910 other upstream 800048 5950424 ~ 5957317 (+)
G152149 actb,LOC107581721,LOC102799139 other upstream 985498 5725886 ~ 5771867 (+)
slc29a4 slc29a4,LOC107104199,LOC107105090 other upstream 1110175 5626207 ~ 5647190 (+)
G152125 NA other upstream 1206819 5533856 ~ 5550546 (+)
rbx1 rbx1 other upstream 1293062 5461939 ~ 5464303 (+)
dexi dexi,LOC107590611 other downstream 510185 7270128 ~ 7274611 (+)
emp2 emp2 other downstream 580042 7339985 ~ 7356838 (+)
G152892 NA other downstream 1367322 8127265 ~ 8127981 (+)
mcrip1 mcrip1 other downstream 1685477 8445420 ~ 8449305 (+)
mapk3 mapk3,LOC104942729 other downstream 1906527 8666470 ~ 8684765 (+)

Expression


Co-expression Network