G179836 (LOC101481809)


Basic Information

Item Value
gene id G179836
gene name LOC101481809
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 32716615 ~ 32906062 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU243575
gtttttttcataatatgggcactttaatggaATTTAAATGCACACAGTTGGGtgcagggctgcaactaacataGACTATATTCTTGTCGAAAAAAGAACGAGAACGTGagaatttttttccaactttagtttagcttttttaaaacattcatGATGGGTTTTAagacattgtttattttttttatttttttacatttttcatacgttttgtagtttttttatgacattttgcaGACACACCTGTCCGACCGTATATGGACTTCCCTCTGCAGGTAAAATAAGAGATCTCAACTGAGCACATTGAGAGCTTCTGGGGCTCCCCAAATGTTTCtctcaacaaacaaaaacatctcATCACTTCTAAAACGTCAATACaggcaaagaaaacaaaattaatttacaaaaacgtttagaaaagcaaaaaagtgacaaaaaaaaattgataaaagaaaacaaaataagaaaaagctacaaaaacgtgTAAACACATGAAACACGTcgaaaacactgacaaaaaaaatcattgaaaaaatAGAATGTTCCAACCAATCAGCTCTcagcaacaaacatggagactaaataagtcaaagagttaaaacacagaatttaacccttaaatgacttctgtctatttcagtttacaaaACTCAGCAGAGACACCAGTATAACCAACAAGCGCCAGTCCAGCATAgagcggctgagtgaatgtggtctggactctgtggaggagagtcatggtttcagagacgctgtagaaggacagaagacctgcactgtgatccaggtacactcctactctggaggactcaggACCTGAGACGGGAGTTTGGACATCGTTGGACCAAAATGTATAACTGTTGTTTTTACAATATAATgcccaagatttgtcatttCGTCCAAATCCACATTCATCAGACgcccctgctctgctgatattcttgtatgcgactgctacatcaactcctctccctctcctctccacctcccagtaacaacgtccagtcagactctctctactcaggacctgccACTCTTcagtgaatctgtctgggtgactagaataagaCTGATGTTCACTCATTACTGCtgctttcctgttcccctcagataataacagcCATGTGTatgctgtgtttggatccagtgtgatttcacgtgaatattttaagaatccagctctggtcttgggctctggttgttgcagtaaaacgtccacttcatttcctgtcagtgagacgtttgtcctcttctctctcaggacgtcctgtagtttatctctgacttctgacacggccgctgtcacgtcctcaaagcagctcagaggacggatatggatgctggatgttgattggctgagtggtgacagtgaggggtagttgtgtagaaactggttgtgatcctctgtgtgtgagagcttcttcagctcagcgtctttcctcttcagctcagtgatctcctgctccagcttctcctgaagctctttgactcgactcacttcacttttctgctgggatctgacctgctgctccacatcagagcttcttttctccaggagacggatcagctcagtgaagatcttctcgctgtcctccactgctttatcagcagagagattgatggcctccgcctgctgttgaagcagcttcacatctttctctctgtcctggattctctgctggatgttttgttgactcccctcgagctctctctgcctctcagctGTCTCTCCCGCAGCTGAGACTTCCTCCtcagagcagagataacagataagctgctgatcagtatgacagaacatcttcatcacctcatcatgccgagagcagacgttctcctggagcttcttggacggctccaccagcttgtgtttcttcaATGTCTCTGATTCATAATGAAACTGAAGGTGTTTCTCACAGAAAGAAGCCAGACATTGCAGACAGGACTTGTGTGCTTTGTGTTTTCTCCcggtgcagacatcacaggccacatcttcagctccagcatagcagtgatcagcaggagcagtttggagtccagtcttcttcagttcctccactaaatctgctaacatggtgtttttcagcaggacaggcctcggtgtgaacGTCTTTCTGCACTGAGGACAGCTGTAGATGTACTTACGATCCTCTTCATCccagtggcttttaatacagttcatgcagtagctgtgtccacagggagtagtcaccggatccttcagtagatccagacagatggaacaagagaaggtttcCTGGACCAGCTCAACTcctttctgcgccatttcacctctcgctcagtgacgactgtctgtgtgtctctgtgttatgTCTCGCAACGTTACGTAACTTGCTGGGAAACGACACTGTCCAATCTCTCTGTACGTCTCCCTCAGGTGTGTTTCTCCAGATGACTCAGTGCTCGTCTGCTGCAGAAGCCATTCATGTGATATTG
>TU243577
gtttttttcataatatgggcactttaatggaATTTAAATGCACACAGTTGGGtgcagggctgcaactaacataGACTATATTCTTGTCGAAAAAAGAACGAGAACGTGagaatttttttccaactttagtttagcttttttaaaacattcatGATGGGTTTTAagacattgtttattttttttatttttttacatttttcatacgttttgtagtttttttatgacattttgcaGACACACCTGTCCGACCGTATATGGACTTCCCTCTGCAGGTAAAATAAGAGATCTCAACTGAGCACATTGAGAGCTTCTGGGGCTCCCCAAATGTTTCtctcaacaaacaaaaacatctcATCACTTCTAAAACGTCAATACaggcaaagaaaacaaaattaatttacaaaaacgtttagaaaagcaaaaaagtgacaaaaaaaaattgataaaagaaaacaaaataagaaaaagctacaaaaacgtgTAAACACATGAAACACGTcgaaaacactgacaaaaaaaatcattgaaaaaatAGAATGTTCCAACCAATCAGCTCTcagcaacaaacatggagactaaataagtcaaagagttaaaacacagaatttaacccttaaatgacttctatttcagtttacacaactcagcagagactccaGTATAACCAACAAGCGCAAGTCCAGCATAgagcggctgagtgaatgtggtctggactctgtggaggagagtcatggtttcagagacgctgtagaaggacagaatacctgcactgtgatccaggtacactcctactctggaggactcaggACCTGAGACGGGAGTTTGGACATTGttg
>TU243578
CCTCAGTCAACGCAGCAACtttacctatgttatgggacttatagaaccAGAACCATCAGACACtttgttatgggacttatagaaccAGAAccatcagacagtttctacctatgttatgggacttatagaaccAGAAccatcagacagtttctacctatgttatgggacttatagaaccAGAAccatcagacagtttctacctatgttatgggacttatagaaccAGAAcgatcagacagtttctacttatgttatgggacttatagaaccAGAACCATCAGACAGTTTCTGACTCTCTTTAGGAAGGGAAAAGGAGTCATCCTAACAGTTAGATACAAAACAGGATGGAATAAGAAAGcgacaattaaaataaaaccatcTCAACAGGTTTAAAACGGCAataaaaaatttacaaaatcttttataaaagcataaaaaagtaagaaaaaaacaactaaaacgTGTCAACACAtgaaaaacgtaaaaaaaatagaatgacACAACATTCAGCTCTCAGTAACAAACATGGAGACGAAATAAGTCAAAGaattaaaacacagaatttacccttaaatgacttctgtctatttcagtttacacaactcagcagacTCTCCAGAACAACCATAAACCCCAAGTCCAGCATAgagcggctgagtgaatgtggtctggactctgtggaggagagtcatggtttcagagacgctgtagaaggacagaatacctgcactgtgatccaggtacactcctactctggaggactcaggACCTGAGACGGGAGTTTGGACATCGTTGGACCAAAATGTATAACTGTTGTTTTTACAATATAATgcccaagatttgtcatttCGTCCAAATCCACATTCATCAGACgcccctgctctgctgatattcttgtatgcgactgctacatcaactcctctccctctcctctccacctcccagtaacaacgtccagtcagactctctctactcaggacctgccACTCTTcagtgaatctgtctgggtgactagaataagaCTGATGTTCACTCATTACTGCtgctttcctgttcccctcagataataacagcCATGTGTatgctgtgtttggatccagtgtgatttcacgtgaatattttaagaatccagctctggtcttgggctctggttgttgcagtaaaacgtccacttcatttcctgtcagtgagacgtttgtcctcttctctctcaggacgtcctgtagtttatctctgacttctgacacggccgctgtcacgtcctcaaagcagctcagaggacggatatggatgctggatgttgattggctgagtggtgacagtgaggggtagttgtgtagaaactggttgtgatcctctgtgtgtgagagcttcttcagctcagcgtctttcctcttcagctcagtgatctcctgctccagcttctcctgaagctctttgactcgactcacttcacttttctgctgggatctgacctgctgctccacatcagagcttcttttctccaggagacggatcagctcagtgaagatcttctcgctgtcctccactgctttatcagcagagagattgatggcctccgcctgctgttgaagcagcttcacatctttctctctgtcctggattctctgctggatgttttgttgactcccctcgagctctctctgcctctcagctGTCTCTCCCGCAGCTGAGACTTCCTCCtcagagcagagataacagataagctgctgatcagtatgacagaacatcttcatcacctcatcatgccgagagcagacgttctcctggagcttcttggacggctccaccagcttgtgtttcttcaATGTCTCTGATTCATAATGAAACTGAAGGTGTTTCTCACAGAAAGAAGCCAGACATTGCAGACAGGACTTGTGTGCTTTGTGTTTTCTCCcggtgcagacatcacaggccacatcttcagctccagcatagcagtgatcagcaggagcagtttggagtccagtcttcttcagttcctccactaaatctgctaacatggtgtttttcagcaggacaggcctcggtgtgaacGTCTTTCTGCACTGAGGACAGCTGTAGATGTACTTACGATCCTCTTCATCccagtggcttttaatacagttcatgcagtagctgtgtccacagggagtagtcaccggatccttcagtagatccagacagatggaacaagagaaggtttcCTGGACCAGCTCAACTcctttctgcgccatttcacctctcgctcagtgacgactgtctgtgtgtctctgtgttatgTCTCGCAACGTTACGTAACTTGCTGGGAAACGACACTGTCCAATCTCTCTGTACGTCTCCCTCAGGTGTGTTTCTCCAGATGACTCAGTGCTCGTCTGGAGAAACACACCTGAGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243575 True 2451 lncRNA 0.44 2 32731345 32737101
TU243577 False 835 lncRNA 0.36 3 32731345 32906062
TU243578 False 2399 lncRNA 0.45 3 32716615 32744104

Neighbor

gene id symbol gene type direction distance location
fgfr1b LOC103372997,LOC106524404,LOC108231094,LOC103152302,LOC106947031,LOC102225656 coding upstream 338547 32332873 ~ 32378068 (+)
kctd9b kctd9,LOC101469399,LOC101073738 coding upstream 411032 32295848 ~ 32305583 (+)
march5l LOC108230907,LOC103372995,LOC103389347 coding upstream 424687 32276341 ~ 32291928 (+)
npy8ar LOC104936321,LOC100707308,LOC102193818,LOC105917043,LOC106524407 coding upstream 490009 32213732 ~ 32226606 (+)
LOC120545731 cox5b,LOC106567989,LOC106563057 coding upstream 617081 32089425 ~ 32099534 (+)
psmb6 psmb6,LOC107372744,LOC103460825,LOC101466438 coding downstream 34348 32940410 ~ 32949424 (+)
LOC120545699 NA coding downstream 121553 33027615 ~ 33030317 (+)
LOC120545698 NA coding downstream 127788 33033850 ~ 33036232 (+)
LOC120545701 NA coding downstream 146850 33052912 ~ 33054884 (+)
LOC120545707 NA coding downstream 167302 33073364 ~ 33076139 (+)
G179813 NA non-coding upstream 74132 32642236 ~ 32642483 (+)
G179811 NA non-coding upstream 83664 32629518 ~ 32632951 (+)
G179810 NA non-coding upstream 110840 32605568 ~ 32605775 (+)
G179799 NA non-coding upstream 167797 32548487 ~ 32548818 (+)
G179798 NA non-coding upstream 168295 32548050 ~ 32548320 (+)
G179863 NA non-coding downstream 30980 32937042 ~ 32937757 (+)
G179870 NA non-coding downstream 97152 33003214 ~ 33008353 (+)
G179873 helq non-coding downstream 103657 33009719 ~ 33011256 (+)
G179876 NA non-coding downstream 111393 33017455 ~ 33018452 (+)
G179897 helq non-coding downstream 188001 33094063 ~ 33096602 (+)
LOC120545732 lage3,LOC103372999 other upstream 267800 32442010 ~ 32448815 (+)
G179655 cox5b,LOC106567989,LOC106563057 other upstream 617073 32079177 ~ 32099542 (+)
LOC120545711 NA other upstream 638605 32059925 ~ 32078010 (+)
LOC120544927 NA other upstream 884355 31811729 ~ 31832260 (+)
LOC120545154 hapln1,LOC101070352,LOC100699000,LOC101480665 other upstream 1063032 31565245 ~ 31653583 (+)
LOC120545086 LOC100699756 other downstream 58899 32964961 ~ 32984052 (+)
mrps18c NA other downstream 197829 33103891 ~ 33109471 (+)
G179903 NA other downstream 208629 33114691 ~ 33187628 (+)
abraxas1 fam175a other downstream 283959 33190021 ~ 33197957 (+)
G179997 LOC102306450 other downstream 364934 33270996 ~ 33324065 (+)

Expression


Co-expression Network