RNA id: TU243575


Basic Information

Item Value
RNA id TU243575
length 2451
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G179836
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 32716615 ~ 32906062 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtttttttcataatatgggcactttaatggaATTTAAATGCACACAGTTGGGtgcagggctgcaactaacataGACTATATTCTTGTCGAAAAAAGAACGAGAACGTGagaatttttttccaactttagtttagcttttttaaaacattcatGATGGGTTTTAagacattgtttattttttttatttttttacatttttcatacgttttgtagtttttttatgacattttgcaGACACACCTGTCCGACCGTATATGGACTTCCCTCTGCAGGTAAAATAAGAGATCTCAACTGAGCACATTGAGAGCTTCTGGGGCTCCCCAAATGTTTCtctcaacaaacaaaaacatctcATCACTTCTAAAACGTCAATACaggcaaagaaaacaaaattaatttacaaaaacgtttagaaaagcaaaaaagtgacaaaaaaaaattgataaaagaaaacaaaataagaaaaagctacaaaaacgtgTAAACACATGAAACACGTcgaaaacactgacaaaaaaaatcattgaaaaaatAGAATGTTCCAACCAATCAGCTCTcagcaacaaacatggagactaaataagtcaaagagttaaaacacagaatttaacccttaaatgacttctgtctatttcagtttacaaaACTCAGCAGAGACACCAGTATAACCAACAAGCGCCAGTCCAGCATAgagcggctgagtgaatgtggtctggactctgtggaggagagtcatggtttcagagacgctgtagaaggacagaagacctgcactgtgatccaggtacactcctactctggaggactcaggACCTGAGACGGGAGTTTGGACATCGTTGGACCAAAATGTATAACTGTTGTTTTTACAATATAATgcccaagatttgtcatttCGTCCAAATCCACATTCATCAGACgcccctgctctgctgatattcttgtatgcgactgctacatcaactcctctccctctcctctccacctcccagtaacaacgtccagtcagactctctctactcaggacctgccACTCTTcagtgaatctgtctgggtgactagaataagaCTGATGTTCACTCATTACTGCtgctttcctgttcccctcagataataacagcCATGTGTatgctgtgtttggatccagtgtgatttcacgtgaatattttaagaatccagctctggtcttgggctctggttgttgcagtaaaacgtccacttcatttcctgtcagtgagacgtttgtcctcttctctctcaggacgtcctgtagtttatctctgacttctgacacggccgctgtcacgtcctcaaagcagctcagaggacggatatggatgctggatgttgattggctgagtggtgacagtgaggggtagttgtgtagaaactggttgtgatcctctgtgtgtgagagcttcttcagctcagcgtctttcctcttcagctcagtgatctcctgctccagcttctcctgaagctctttgactcgactcacttcacttttctgctgggatctgacctgctgctccacatcagagcttcttttctccaggagacggatcagctcagtgaagatcttctcgctgtcctccactgctttatcagcagagagattgatggcctccgcctgctgttgaagcagcttcacatctttctctctgtcctggattctctgctggatgttttgttgactcccctcgagctctctctgcctctcagctGTCTCTCCCGCAGCTGAGACTTCCTCCtcagagcagagataacagataagctgctgatcagtatgacagaacatcttcatcacctcatcatgccgagagcagacgttctcctggagcttcttggacggctccaccagcttgtgtttcttcaATGTCTCTGATTCATAATGAAACTGAAGGTGTTTCTCACAGAAAGAAGCCAGACATTGCAGACAGGACTTGTGTGCTTTGTGTTTTCTCCcggtgcagacatcacaggccacatcttcagctccagcatagcagtgatcagcaggagcagtttggagtccagtcttcttcagttcctccactaaatctgctaacatggtgtttttcagcaggacaggcctcggtgtgaacGTCTTTCTGCACTGAGGACAGCTGTAGATGTACTTACGATCCTCTTCATCccagtggcttttaatacagttcatgcagtagctgtgtccacagggagtagtcaccggatccttcagtagatccagacagatggaacaagagaaggtttcCTGGACCAGCTCAACTcctttctgcgccatttcacctctcgctcagtgacgactgtctgtgtgtctctgtgttatgTCTCGCAACGTTACGTAACTTGCTGGGAAACGACACTGTCCAATCTCTCTGTACGTCTCCCTCAGGTGTGTTTCTCCAGATGACTCAGTGCTCGTCTGCTGCAGAAGCCATTCATGTGATATTG

Function

GO: NA

KEGG:

id description
ko03030 DNA replication
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243550 lncRNA upstream 88862 32642236 ~ 32642483 (+) True G179813
TU243544 lncRNA upstream 98394 32629518 ~ 32632951 (+) True G179811
TU243545 lncRNA upstream 98848 32629518 ~ 32632497 (+) False G179811
TU243543 lncRNA upstream 125570 32605568 ~ 32605775 (+) True G179810
TU243531 lncRNA upstream 182527 32548487 ~ 32548818 (+) True G179799
TU243590 lncRNA downstream 75967 32813068 ~ 32818384 (+) True G179846
TU243598 lncRNA downstream 146679 32883780 ~ 32925242 (+) True G179853
TU243597 lncRNA downstream 165200 32902301 ~ 32925242 (+) False G179853
TU243612 lncRNA downstream 199941 32937042 ~ 32937757 (+) True G179863
TU243621 lncRNA downstream 266113 33003214 ~ 33008353 (+) True G179870
XM_039780293.1 mRNA upstream 286700 32442010 ~ 32444645 (+) False LOC120545732
XM_039780249.1 mRNA upstream 353277 32332873 ~ 32378068 (+) True fgfr1b
XM_039780268.1 mRNA upstream 425762 32295848 ~ 32305583 (+) True kctd9b
XM_039780278.1 mRNA upstream 439417 32276341 ~ 32291928 (+) False march5l
XM_039779072.1 mRNA downstream 7435 32744536 ~ 32745879 (+) True LOC120545081
XM_039780254.1 mRNA downstream 21113 32758214 ~ 32760074 (+) True LOC120545704
XM_039780250.1 mRNA downstream 66005 32803106 ~ 32805329 (+) True LOC120545697
XM_039780279.1 mRNA downstream 203309 32940410 ~ 32949424 (+) True psmb6
XM_039779076.1 mRNA downstream 234039 32971140 ~ 32984051 (+) False LOC120545086
TU243411 other upstream 282530 32442055 ~ 32448815 (+) True LOC120545732
TU243294 other upstream 631803 32079177 ~ 32099542 (+) True G179655
TU243298 other upstream 631803 32089428 ~ 32099542 (+) False G179655
TU243292 other upstream 639214 32089428 ~ 32092131 (+) False G179655
TU242927 other upstream 1251251 31387747 ~ 31480094 (+) True G179407
TU243616 other downstream 227860 32964961 ~ 32984052 (+) True LOC120545086
TU243673 other downstream 378664 33115765 ~ 33187628 (+) False G179903
TU243664 other downstream 452920 33190021 ~ 33197836 (+) False abraxas1
TU243663 other downstream 453018 33190119 ~ 33197836 (+) False abraxas1
TU243665 other downstream 453018 33190119 ~ 33197957 (+) True abraxas1

Expression Profile