RNA id: TU243531


Basic Information

Item Value
RNA id TU243531
length 305
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G179799
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 32548487 ~ 32548818 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgctttttgaaatgtatttgtattaatccaaaaaacagctaaaactatacttctgcttttgaaatgtatcAGCTCAAGAACAGTGGAGACTGTGCTTCTGCTTTTGACATGAGTTAacccaaaaacagctaaaatatatttctgcTCTTGATTGTGAGTGCTGATGTGCCTTTAGAAATATAATCATGCTAAGTTTTTGTGTTACTGATATTACTATAAACATGCTTGGAGACATTTTAGTGTGAGTTACTGTGTAAAGCTGCCTATTTGACCCTGCAGTCGTGAAGAGGAAGTGTCTGCAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243530 lncRNA upstream 167 32548050 ~ 32548320 (+) True G179798
TU243525 lncRNA upstream 13940 32533690 ~ 32534547 (+) True G179793
TU243521 lncRNA upstream 20195 32528001 ~ 32528292 (+) True G179789
XR_005636736.1 lncRNA upstream 21800 32469548 ~ 32526687 (+) True LOC120545737
XR_005636735.1 lncRNA upstream 33167 32469548 ~ 32515320 (+) False LOC120545737
TU243543 lncRNA downstream 56750 32605568 ~ 32605775 (+) True G179810
TU243544 lncRNA downstream 80700 32629518 ~ 32632951 (+) True G179811
TU243545 lncRNA downstream 80700 32629518 ~ 32632497 (+) False G179811
TU243550 lncRNA downstream 93418 32642236 ~ 32642483 (+) True G179813
TU243578 lncRNA downstream 167797 32716615 ~ 32744104 (+) False G179836
XM_039780293.1 mRNA upstream 103842 32442010 ~ 32444645 (+) False LOC120545732
XM_039780249.1 mRNA upstream 170419 32332873 ~ 32378068 (+) True fgfr1b
XM_039780268.1 mRNA upstream 242904 32295848 ~ 32305583 (+) True kctd9b
XM_039780278.1 mRNA upstream 256559 32276341 ~ 32291928 (+) False march5l
XM_039779072.1 mRNA downstream 195718 32744536 ~ 32745879 (+) True LOC120545081
XM_039780254.1 mRNA downstream 209396 32758214 ~ 32760074 (+) True LOC120545704
XM_039780250.1 mRNA downstream 254288 32803106 ~ 32805329 (+) True LOC120545697
XM_039780279.1 mRNA downstream 391592 32940410 ~ 32949424 (+) True psmb6
XM_039779076.1 mRNA downstream 422322 32971140 ~ 32984051 (+) False LOC120545086
TU243411 other upstream 99672 32442055 ~ 32448815 (+) True LOC120545732
TU243294 other upstream 448945 32079177 ~ 32099542 (+) True G179655
TU243298 other upstream 448945 32089428 ~ 32099542 (+) False G179655
TU243292 other upstream 456356 32089428 ~ 32092131 (+) False G179655
TU242927 other upstream 1068393 31387747 ~ 31480094 (+) True G179407
TU243616 other downstream 416143 32964961 ~ 32984052 (+) True LOC120545086
TU243673 other downstream 566947 33115765 ~ 33187628 (+) False G179903
TU243664 other downstream 641203 33190021 ~ 33197836 (+) False abraxas1
TU243663 other downstream 641301 33190119 ~ 33197836 (+) False abraxas1
TU243665 other downstream 641301 33190119 ~ 33197957 (+) True abraxas1

Expression Profile