RNA id: TU243521


Basic Information

Item Value
RNA id TU243521
length 292
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G179789
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 32528001 ~ 32528292 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTCAATTGAACCTTGTAAACTGTGACAAACTTAAACTGTGAAtgtacccttctgccatctagtcCCTGATGACATTTTCGTTTAATTGAATCGTGGATTTGAATCTGCAGTTaaatgactgtttttgtcaaaggacccttggtggctttgaagagagcagagataacggcttcagttccccgtcgtaaagggctgtctgacagcaaggtgaaGCACTGAAAATACTCTAAATATAGCCTCCAATTAAACTGATATAGATGtttttaggtgtctaaaatgtgttttagctgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636736.1 lncRNA upstream 1314 32469548 ~ 32526687 (+) True LOC120545737
XR_005636735.1 lncRNA upstream 12681 32469548 ~ 32515320 (+) False LOC120545737
TU243405 lncRNA upstream 96447 32417825 ~ 32431554 (+) True LOC120545736
XR_005636733.1 lncRNA upstream 96686 32417821 ~ 32431315 (+) False LOC120545736
TU243525 lncRNA downstream 5398 32533690 ~ 32534547 (+) True G179793
TU243530 lncRNA downstream 19758 32548050 ~ 32548320 (+) True G179798
TU243531 lncRNA downstream 20195 32548487 ~ 32548818 (+) True G179799
TU243543 lncRNA downstream 77276 32605568 ~ 32605775 (+) True G179810
TU243544 lncRNA downstream 101226 32629518 ~ 32632951 (+) True G179811
XM_039780293.1 mRNA upstream 83356 32442010 ~ 32444645 (+) False LOC120545732
XM_039780249.1 mRNA upstream 149933 32332873 ~ 32378068 (+) True fgfr1b
XM_039780268.1 mRNA upstream 222418 32295848 ~ 32305583 (+) True kctd9b
XM_039780278.1 mRNA upstream 236073 32276341 ~ 32291928 (+) False march5l
XM_039779072.1 mRNA downstream 216244 32744536 ~ 32745879 (+) True LOC120545081
XM_039780254.1 mRNA downstream 229922 32758214 ~ 32760074 (+) True LOC120545704
XM_039780250.1 mRNA downstream 274814 32803106 ~ 32805329 (+) True LOC120545697
XM_039780279.1 mRNA downstream 412118 32940410 ~ 32949424 (+) True psmb6
XM_039779076.1 mRNA downstream 442848 32971140 ~ 32984051 (+) False LOC120545086
TU243411 other upstream 79186 32442055 ~ 32448815 (+) True LOC120545732
TU243294 other upstream 428459 32079177 ~ 32099542 (+) True G179655
TU243298 other upstream 428459 32089428 ~ 32099542 (+) False G179655
TU243292 other upstream 435870 32089428 ~ 32092131 (+) False G179655
TU242927 other upstream 1047907 31387747 ~ 31480094 (+) True G179407
TU243616 other downstream 436669 32964961 ~ 32984052 (+) True LOC120545086
TU243673 other downstream 587473 33115765 ~ 33187628 (+) False G179903
TU243664 other downstream 661729 33190021 ~ 33197836 (+) False abraxas1
TU243663 other downstream 661827 33190119 ~ 33197836 (+) False abraxas1
TU243665 other downstream 661827 33190119 ~ 33197957 (+) True abraxas1

Expression Profile