RNA id: XR_005636736.1


Basic Information

Item Value
RNA id XR_005636736.1
length 992
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC120545737
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 32469548 ~ 32526687 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACCGGTAAACTAACGCAACAGCTTCGGCCTGAGAACAACCTGTGacagaggagaaaaacaacaacatgacgGCTGTTCAAGACGACAAACTTCAGtgtggctagaagggatacagctacggccgGAAGTTACGCAAAATCTCGGAAACACGAGCAGAGCCTGAACCCAGCTGACTGTGGGTGGATGAAGTCATTTTTCGCAGACGGTATTTGGCCCTGTTTGGATCACCTCAAGtggCTTTCCTGCGGAGCAagctgagagacacacacggcCCCCTCCCCAACGACAAAAGGATGAGGATGCACATTTTAAGATATCATTATAAAAAGTCAGAGAGCAGAACTCACACAGACGCTGGAGatttaaagaaatacacattttgggaaataacaCTTTTCACTTTGGTTCTGGGTGTGCAATGAGAATAAATgaatctcatgtctgtgtgttgaaAGGATAGCCGTTATCTCTGCTCGCTTCAAAGCCACCTTTGAGAAAAACGGtcattttacctcgcagaacacgggagttgctgctctaccaCTGCCTCCATCAGTTAGTTAGTTGGTTAGTTTTGTTAGTTCCTAACACTTTAAAACAACAAAGTCACACGACCCTCGCTCCTCTGGTTgtaaaaaagacatttaaaacttaaaattaaaataaatataaataaatattaaattaaaatataccAGAGTGCAATCCCTAAAATAAGATTAACCTTCTGCCTCGACTCCTGAACCTGAACATGAAGAAGGATGAACTATGAAGACTAAAACTAGAAGGCCTCATCTATGATTGTCTTAGGTCAATACATATCGGAGCTAAAGGGATGTAGAGTCAAGGgaaaacaccaaacactgtTGATGTTATAAAGGGTTGATTTGGATTCCCCAAAGTTACACAGTTACACAAACTAACTAACCACCAATGTTAGCTTACCGGATgatagcatgcagctaaagacacaggttaATGTAAGCTTact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243405 lncRNA upstream 37994 32417825 ~ 32431554 (+) True LOC120545736
XR_005636733.1 lncRNA upstream 38233 32417821 ~ 32431315 (+) False LOC120545736
XR_005636732.1 lncRNA upstream 40717 32417821 ~ 32428831 (+) False LOC120545736
XR_005636731.1 lncRNA upstream 42325 32417821 ~ 32427223 (+) False LOC120545736
XR_005636734.1 lncRNA upstream 42325 32417821 ~ 32427223 (+) False LOC120545736
TU243521 lncRNA downstream 1314 32528001 ~ 32528292 (+) True G179789
TU243525 lncRNA downstream 7003 32533690 ~ 32534547 (+) True G179793
TU243530 lncRNA downstream 21363 32548050 ~ 32548320 (+) True G179798
TU243531 lncRNA downstream 21800 32548487 ~ 32548818 (+) True G179799
TU243543 lncRNA downstream 78881 32605568 ~ 32605775 (+) True G179810
XM_039780293.1 mRNA upstream 24903 32442010 ~ 32444645 (+) False LOC120545732
XM_039780249.1 mRNA upstream 91480 32332873 ~ 32378068 (+) True fgfr1b
XM_039780268.1 mRNA upstream 163965 32295848 ~ 32305583 (+) True kctd9b
XM_039780277.1 mRNA upstream 177620 32276341 ~ 32291928 (+) False march5l
XM_039779072.1 mRNA downstream 217849 32744536 ~ 32745879 (+) True LOC120545081
XM_039780254.1 mRNA downstream 231527 32758214 ~ 32760074 (+) True LOC120545704
XM_039780250.1 mRNA downstream 276419 32803106 ~ 32805329 (+) True LOC120545697
XM_039780279.1 mRNA downstream 413723 32940410 ~ 32949424 (+) True psmb6
XM_039779076.1 mRNA downstream 444453 32971140 ~ 32984051 (+) False LOC120545086
TU243411 other upstream 20733 32442055 ~ 32448815 (+) True LOC120545732
TU243294 other upstream 370006 32079177 ~ 32099542 (+) True G179655
TU243298 other upstream 370006 32089428 ~ 32099542 (+) False G179655
TU243292 other upstream 377417 32089428 ~ 32092131 (+) False G179655
TU242927 other upstream 989454 31387747 ~ 31480094 (+) True G179407
TU243616 other downstream 438274 32964961 ~ 32984052 (+) True LOC120545086
TU243673 other downstream 589078 33115765 ~ 33187628 (+) False G179903
TU243664 other downstream 663334 33190021 ~ 33197836 (+) False abraxas1
TU243663 other downstream 663432 33190119 ~ 33197836 (+) False abraxas1
TU243665 other downstream 663432 33190119 ~ 33197957 (+) True abraxas1

Expression Profile