RNA id: TU243525


Basic Information

Item Value
RNA id TU243525
length 858
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G179793
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 32533690 ~ 32534547 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCATCCATTATTAATCACAATGTTAATTTTTATGACTCGTTACCGTAGATGAACTGGTTGCTGGACGCTTGAGTATCGTTGAACCCACGGACGCAGCTATAGCATGTTGTTTGAATCGtgtgttaaagctttagtgcgtaactttttgatattaatgagcgtccgttacattcaagccgttgccaaatgagttgctacaaagctaattaagactatcagctccacacaactctctctggatctctcagtacgactatgttcagaagattgtggcgtccggtgactttcccgtgcagaaactcaagtgaagataatgacctcttctgaagagtccgtcatgtttttttaatcctccatgtcctccttggctactagcaactgtgtggaggaggcgagggggggggggggggtggggggaggagaggcgcagtcacagaaggcttgtatcatgtggacgcgactacagttttgttgtcattacttagaattcctcatgggggcgacagaaactacgcgctATAGCTTTCACATGGACATGGATATTGCGTTTATCCTATTTGTGATCCTATTTTCGGGATGTGATGTTTACATGGCACACAGAGAAATCATGTTATTCATATCTCCGTACAAGCTCGCTGACAgttgtctgctctgagcgcatccacctatctccctctctctctctctctctctctctctctctctctctctccctctctctcttacaaAACACTTCAGTAACATATTTTCATGATCTGGTCATCGTGATATGATAAAAGTACGCTGGGAGCACACTCTCATGCACATTACATATTAtaagaacagctgatttctgGAGCAGTACACTGCTTAAGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243521 lncRNA upstream 5398 32528001 ~ 32528292 (+) True G179789
XR_005636736.1 lncRNA upstream 7003 32469548 ~ 32526687 (+) True LOC120545737
XR_005636735.1 lncRNA upstream 18370 32469548 ~ 32515320 (+) False LOC120545737
TU243405 lncRNA upstream 102136 32417825 ~ 32431554 (+) True LOC120545736
XR_005636732.1 lncRNA upstream 104859 32417821 ~ 32428831 (+) False LOC120545736
TU243530 lncRNA downstream 13503 32548050 ~ 32548320 (+) True G179798
TU243531 lncRNA downstream 13940 32548487 ~ 32548818 (+) True G179799
TU243543 lncRNA downstream 71021 32605568 ~ 32605775 (+) True G179810
TU243544 lncRNA downstream 94971 32629518 ~ 32632951 (+) True G179811
TU243545 lncRNA downstream 94971 32629518 ~ 32632497 (+) False G179811
XM_039780293.1 mRNA upstream 89045 32442010 ~ 32444645 (+) False LOC120545732
XM_039780249.1 mRNA upstream 155622 32332873 ~ 32378068 (+) True fgfr1b
XM_039780268.1 mRNA upstream 228107 32295848 ~ 32305583 (+) True kctd9b
XM_039780278.1 mRNA upstream 241762 32276341 ~ 32291928 (+) False march5l
XM_039779072.1 mRNA downstream 209989 32744536 ~ 32745879 (+) True LOC120545081
XM_039780254.1 mRNA downstream 223667 32758214 ~ 32760074 (+) True LOC120545704
XM_039780250.1 mRNA downstream 268559 32803106 ~ 32805329 (+) True LOC120545697
XM_039780279.1 mRNA downstream 405863 32940410 ~ 32949424 (+) True psmb6
XM_039779076.1 mRNA downstream 436593 32971140 ~ 32984051 (+) False LOC120545086
TU243411 other upstream 84875 32442055 ~ 32448815 (+) True LOC120545732
TU243294 other upstream 434148 32079177 ~ 32099542 (+) True G179655
TU243298 other upstream 434148 32089428 ~ 32099542 (+) False G179655
TU243292 other upstream 441559 32089428 ~ 32092131 (+) False G179655
TU242927 other upstream 1053596 31387747 ~ 31480094 (+) True G179407
TU243616 other downstream 430414 32964961 ~ 32984052 (+) True LOC120545086
TU243673 other downstream 581218 33115765 ~ 33187628 (+) False G179903
TU243664 other downstream 655474 33190021 ~ 33197836 (+) False abraxas1
TU243663 other downstream 655572 33190119 ~ 33197836 (+) False abraxas1
TU243665 other downstream 655572 33190119 ~ 33197957 (+) True abraxas1

Expression Profile