RNA id: XR_005636732.1


Basic Information

Item Value
RNA id XR_005636732.1
length 308
lncRNA type inter_gene
GC content 0.57
exon number 5
gene id LOC120545736
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 32417821 ~ 32431554 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCCATCCTTACTCTGTAACCTGTAAACTGCAGCTTTTGTCTGCCCTGCTGGCTTCCACTTCTCTTTAGCCTGCTCTCCAAACCAGTCTCCTTTAGTGAGCGTCTTCACGATCACCTGCTCGTCCCCAGGCGCCCCTAGCATTCGCCCATGCTGCCTTTGCCACGGGCCGGCCGTGCATGCATCAGGAAAACGTTCCAGGGGCGGGAGTGAGACGGGAAGAAACTCGTACGAAGAGTCCAGGGACAGTCGCTGAGGCAGgcacacagaggagagaaaaggaatgctgtgtggactagccagaccctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243368 lncRNA upstream 85534 32272423 ~ 32332287 (+) True G179707
TU243387 lncRNA upstream 132879 32284125 ~ 32284942 (+) True G179713
TU243370 lncRNA upstream 142058 32275468 ~ 32275763 (+) True G179709
TU243346 lncRNA upstream 163030 32250073 ~ 32254791 (+) True G179687
TU243360 lncRNA upstream 199132 32218199 ~ 32218689 (+) True G179699
XR_005636736.1 lncRNA downstream 40717 32469548 ~ 32526687 (+) True LOC120545737
XR_005636735.1 lncRNA downstream 40717 32469548 ~ 32515320 (+) False LOC120545737
TU243521 lncRNA downstream 99170 32528001 ~ 32528292 (+) True G179789
TU243525 lncRNA downstream 104859 32533690 ~ 32534547 (+) True G179793
TU243530 lncRNA downstream 119219 32548050 ~ 32548320 (+) True G179798
XM_039780249.1 mRNA upstream 39753 32332873 ~ 32378068 (+) True fgfr1b
XM_039780268.1 mRNA upstream 112238 32295848 ~ 32305583 (+) True kctd9b
XM_039780277.1 mRNA upstream 125893 32276341 ~ 32291928 (+) False march5l
XM_039780293.1 mRNA downstream 13179 32442010 ~ 32444645 (+) False LOC120545732
XM_039779072.1 mRNA downstream 315705 32744536 ~ 32745879 (+) True LOC120545081
XM_039780254.1 mRNA downstream 329383 32758214 ~ 32760074 (+) True LOC120545704
XM_039780250.1 mRNA downstream 374275 32803106 ~ 32805329 (+) True LOC120545697
XM_039780279.1 mRNA downstream 511579 32940410 ~ 32949424 (+) True psmb6
TU243294 other upstream 318279 32079177 ~ 32099542 (+) True G179655
TU243298 other upstream 318279 32089428 ~ 32099542 (+) False G179655
TU243292 other upstream 325690 32089428 ~ 32092131 (+) False G179655
TU242927 other upstream 937727 31387747 ~ 31480094 (+) True G179407
XR_005636691.1 other upstream 2106927 30264383 ~ 30310894 (+) True zmiz2
TU243411 other downstream 13224 32442055 ~ 32448815 (+) True LOC120545732
TU243616 other downstream 536130 32964961 ~ 32984052 (+) True LOC120545086
TU243673 other downstream 686934 33115765 ~ 33187628 (+) False G179903
TU243664 other downstream 761190 33190021 ~ 33197836 (+) False abraxas1
TU243663 other downstream 761288 33190119 ~ 33197836 (+) False abraxas1

Expression Profile