pitpnb (LOC108247152,LOC107396064,LOC101477519,LOC106533593,LOC104948049,LOC103370350,LOC101162302)


Basic Information

Item Value
gene id pitpnb
gene name LOC108247152,LOC107396064,LOC101477519,LOC106533593,LOC104948049,LOC103370350,LOC101162302
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 29346769 ~ 29373529 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039779292.1
TGTTGATAATTCTATCTGGTGTCCACTCCCAGTGCGCAGGCGCAGCCCGGGTGACGAAGATGGTGCTCATCAAGGAATAccGTGTAGTGTTGCCAGTCTCTGTGGAAGAGTATCAAGTAGGGCAGCTGTTCTCTGTGGCCGAGGCCAGTAAGAATGAGACCGGAGGAGGAGAAGGCATCGAGGTGCTGAAGAATGAGCCTTACGAGAAGGACGGGGAGAAgggacaatacacacacaaaatataccATCTAAAGAGTAAAGTCCCAGGTTATGTGAAGATGATTGCACCAGAGGGAGCGTTAGTTTTTCACGAAAAGGCTTGGAACGCCTACCCGTACTGTCGCACCATTGTGACGAACGAGTACATGAAGGACGACTTTATGATAAAGATCGAGACGTGGCACAAACCTGACATGGGAACAATAGAAAATGTCCATGACCTGGACGAGCAGACATGGAGGACTGTGGAGGTGTCTCCCATAGATATTGCAAACAAAGAAGAAGTGGCCCAAGGGgacTATAAGCCAGAAGAAGATCCCGCTCTTTTCCACTCCGCCAAGACGGGCAGAGGACCTCTCGGCCCCGAATGGAAGaaTGAGCTGAAGACAGACTGTCCTTACATGTGTGCATACAAACTGGTCACTGTCAAGTTCAGATGGTGGGGTCTGCAGACCAAAGTGGAGAACTTCATCCACAGGCAAGAAAAGCGTATATTCACCAACTTCCACCGCCAGCTGTTCTGCTGGATTGACAGATGGGTGGGTTTGACCATGGAGGACATCAGGCGGATGGAAGAGGAGACCCAGAAAGAGCTCGAGGAGctGCGTAATACAGGTCCGATTCGAGGCaccagtgctgctcatgagCAATGAGGCAAATCAACCAAAACCCTGtcatgatgatgtcatcagagaCACGTCCACCACGTTGAGGAAGTGGCCCTGACGTTCGTCGcctctcctcttcctgtctCACATGATTCATTGGGGGGGGTTTGACAAAGATTGGTTTAACAGTACTGTACAGATTCTCTACCCCGATCACAAGCCTCCTGTTcaccacagaaaaaaaacaacaaaaccatGGTTTTTgcatacatataaaaaaaggaaaaaaaaaaaaaaaaactttgcacAGAACGTAAAAATTGCCTGATATGTAATTGTTAGTTGATTATTACAATGGGCTTTGTTTTTATTCAGGTGTGTAAACCGTGACTCAGAAAGT
>XM_039779293.1
TGTTGATAATTCTATCTGGTGTCCACTCCCAGTGCGCAGGCGCAGCCCGGGTGACGAAGATGGTGCTCATCAAGGAATAccGTGTAGTGTTGCCAGTCTCTGTGGAAGAGTATCAAGTAGGGCAGCTGTTCTCTGTGGCCGAGGCCAGTAAGAATGAGACCGGAGGAGGAGAAGGCATCGAGGTGCTGAAGAATGAGCCTTACGAGAAGGACGGGGAGAAgggacaatacacacacaaaatataccATCTAAAGAGTAAAGTCCCAGGTTATGTGAAGATGATTGCACCAGAGGGAGCGTTAGTTTTTCACGAAAAGGCTTGGAACGCCTACCCGTACTGTCGCACCATTGTGACGAACGAGTACATGAAGGACGACTTTATGATAAAGATCGAGACGTGGCACAAACCTGACATGGGAACAATAGAAAATGTCCATGACCTGGACGAGCAGACATGGAGGACTGTGGAGGTGTCTCCCATAGATATTGCAAACAAAGAAGAAGTGGCCCAAGGGgacTATAAGCCAGAAGAAGATCCCGCTCTTTTCCACTCCGCCAAGACGGGCAGAGGACCTCTCGGCCCCGAATGGAAGaaTGAGCTGAAGACAGACTGTCCTTACATGTGTGCATACAAACTGGTCACTGTCAAGTTCAGATGGTGGGGTCTGCAGACCAAAGTGGAGAACTTCATCCACAGGCAAGAAAAGCGTATATTCACCAACTTCCACCGCCAGCTGTTCTGCTGGATTGACAGATGGGTGGGTTTGACCATGGAGGACATCAGGCGGATGGAAGAGGAGACCCAGAAAGAGCTCGAGGAGatgCGTCAGAAGGGGGATGTGCGAGGCACCTCTGCGACAGACGAGTAGAGGCCCGTCGCTGTAGCTCAAACACTAGAGGCAGGCTGActGCGTAATACAGGTCCGATTCGAGGCaccagtgctgctcatgagCAATGAGGCAAATCAACCAAAACCCTGtcatgatgatgtcatcagagaCACGTCCACCACGTTGAGGAAGTGGCCCTGACGTTCGTCGcctctcctcttcctgtctCACATGATTCATTGGGGGGGGTTTGACAAAGATTGGTTTAACAGTACTGTACAGATTCTCTACCCCGATCACAAGCCTCCTGTTcaccacagaaaaaaaacaacaaaaccatGGTTTTTgcatacatataaaaaaaggaaaaaaaaaaaaaaaaactttgcacAGAACGTAAAAATTGCCTGATATGTAATTGTTAGTTGATTATTACAATGGGCTTTGTTTTTATTCAGGTGTGTAAACCGTGACTCAGAAAGT

Function

NR:

description
PREDICTED: phosphatidylinositol transfer protein beta isoform-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039779292.1 False 1227 mRNA 0.48 11 29346769 29373529
XM_039779293.1 True 1314 mRNA 0.48 12 29346769 29373529

Neighbor

gene id symbol gene type direction distance location
ttc28 NA coding upstream 711 29179812 ~ 29346058 (+)
pla2g3 NA coding upstream 169955 29164232 ~ 29176814 (+)
rph3aa LOC104964590,LOC107086068,LOC102797992,LOC103361309 coding upstream 187668 29108216 ~ 29159101 (+)
eif2b1 eif2b1 coding upstream 301638 29037069 ~ 29045131 (+)
clip1b LOC103361300 coding upstream 327998 28981477 ~ 29018771 (+)
naa25 naa25 coding downstream 4162 29377691 ~ 29411537 (+)
LOC120546010 brap,LOC102795910 coding downstream 38668 29412197 ~ 29428182 (+)
tor4aa tor4a coding downstream 56581 29430110 ~ 29441036 (+)
slc25a1b LOC101069509,LOC103373622,LOC106568272 coding downstream 86980 29460509 ~ 29472975 (+)
pi4kaa LOC104948040 coding downstream 101036 29474565 ~ 29527472 (+)
G178521 NA non-coding upstream 314407 29031515 ~ 29032362 (+)
G178491 NA non-coding upstream 438398 28904473 ~ 28908371 (+)
G178468 NA non-coding upstream 497886 28846471 ~ 28848883 (+)
G178460 NA non-coding upstream 514439 28828109 ~ 28832330 (+)
G178441 NA non-coding upstream 645363 28658485 ~ 28701406 (+)
G178710 NA non-coding downstream 71524 29445053 ~ 29458536 (+)
G178725 NA non-coding downstream 154896 29528425 ~ 29531359 (+)
G178728 NA non-coding downstream 170630 29544159 ~ 29544741 (+)
G178835 LOC104948034,LOC103371291,LOC107101750,LOC105915605 non-coding downstream 318909 29692438 ~ 29701839 (+)
G178847 NA non-coding downstream 398791 29772320 ~ 29790111 (+)
G178529 NA other upstream 254443 29084949 ~ 29092326 (+)
ptpn11a ptpn11 other upstream 263758 29006621 ~ 29083011 (+)
G178506 NA other upstream 401325 28944507 ~ 28945444 (+)
LOC120544907 hnrnpd,LOC104960871 other upstream 758737 28580268 ~ 28588032 (+)
LOC120545218 NA other upstream 774374 28567146 ~ 28572395 (+)
rasgrf2a NA other downstream 228002 29601531 ~ 29667231 (+)
G178845 NA other downstream 369094 29742623 ~ 29750295 (+)
LOC120545429 LOC104948058 other downstream 420275 29793804 ~ 29795825 (+)
G178881 NA other downstream 647790 30021319 ~ 30022217 (+)
zmiz2 zmiz2 other downstream 885837 30259366 ~ 30310894 (+)

Expression


Co-expression Network