G78434


Basic Information

Item Value
gene id G78434
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 17372801 ~ 17375304 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU97852
CTTAAATAATAGcaatattttattcacaatAAACTCAATCCACAGCATATACAAGATAAgtgtcacaatttaaaaaaatggaaatccaAACAATATGTACATCCATTTCCCGAAGAAAAGTCGTCTATTATAAAGTTCTGACTGATTCTTACCTAATACGTAGTTTTCAGTGCTCTACTGTGGCTTCCAACAACCACTACACAGTGCTGTTCTAGTGCTAatacactgaaaaatgtatattcatgtaAGTGAACTTGAAGTAAACACAATGCCACCATGGAAGATGTTCACACTTTGATAGCAAGTGTCAGTATTTAACAGTGTAAATGTATGAGAATGGTTGTTGCCAGGGATTGGATACAGTGAATATATTCAGCAGGTAACTTAATCAATGCTGGACTCATTAATAGGCACTTATTTAGGAGGGAGAAAGTTGTTAATTAAGCCACTGacctggttaaaaaaaaaagcttatgaAAACAAACGTgttgtgaatatatttttttaaatgaatcaaaaTTGAATAAAAGGGCGGTTAGAAAGAAGAAAGAGCATCAGGTCAGATGAAGTCACCCTAAGGAAATAAGCAAGACATGGATTTTCTTACTGCCTTCTTTCTGCTGGAATCGtcagtacaataaaataatggatttgGCAGCTCTGTCAGTCCCGGTCGCTGGCTTTGATTCATCAGCACAGCAGCTGCAATCTCTTGGTGTCAGACCTTCATTGCTGGTTGTCATACAGAGGGTTGCTGAAATTCCCCACTGATCCGTAATCACTGTCATCCAAAAGCCGGCCGTATGCGGTGCGCCTGCTCATCTTAAGGTAGTAGGCTCCTCCAAAGACCAAAATCACAATTGCAATAACTGCACTTACAATGAGGATTACATTCCCTGGAAAGAAAGACAACAGAATTCATTGTATACAGTAcctcaaaatattttcttattcagtGAAGTCTACAGTTAGTTTTGATCTGTTTTCCACTATGTAAAGAGCAGCAAGcctatactgtactgtgattCATCATGTCTTGCTCACATAAGAGTGAACATTCTCCAAAGGTGAGATTTCCACTTGAACGTGTAAACATAAGGATATAATTATCTTGGTTGTGAGTCCATAAAAGAAGTTGGATTTGAATCTCCTTGTAATATACCAGTACAATCTTTAAAACTAAAGTCAGGGCTGATTATCCTTTGTataacaatgacaataacaataacactagCTGTATGTGTTGGTGTGTGGTAATACATCCTTCAAGACTCTTCACATCTTTGCTATAAACTAACCAAAGATTATACATTAAC

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion

RNA

RNA id representative length rna type GC content exon number start site end site
TU97852 True 1316 lncRNA 0.37 2 17372801 17375304

Neighbor

gene id symbol gene type direction distance location
AMCG00010170 NA coding downstream 19352 17353153 ~ 17353449 (-)
AMCG00010171 NA coding downstream 27239 17345266 ~ 17345562 (-)
AMCG00010172 NA coding downstream 28899 17343278 ~ 17343902 (-)
AMCG00010159 rufy3,LOC107553597 coding downstream 159517 17194002 ~ 17213284 (-)
AMCG00010157 mob1b,LOC107746863,LOC103036920,LOC107585392 coding downstream 185863 17168595 ~ 17186938 (-)
AMCG00010179 NA coding upstream 4884 17380188 ~ 17388056 (-)
AMCG00010178 NA coding upstream 19833 17395137 ~ 17403507 (-)
AMCG00010180 NA coding upstream 64879 17440183 ~ 17452488 (-)
AMCG00010182 NA coding upstream 89808 17465112 ~ 17473608 (-)
AMCG00010181 fam214b,LOC103397924 coding upstream 108201 17483505 ~ 17493788 (-)
G78433 NA non-coding downstream 62284 17310162 ~ 17310517 (-)
G78432 NA non-coding downstream 62830 17309582 ~ 17309971 (-)
G78431 NA non-coding downstream 63885 17308710 ~ 17308916 (-)
G78430 NA non-coding downstream 64535 17307850 ~ 17308266 (-)
G78429 NA non-coding downstream 65800 17306377 ~ 17307001 (-)
G78468 NA non-coding upstream 29102 17404406 ~ 17405317 (-)
G78470 NA non-coding upstream 32687 17407991 ~ 17408199 (-)
G78508 NA non-coding upstream 82640 17457944 ~ 17458473 (-)
G78509 NA non-coding upstream 83585 17458889 ~ 17460504 (-)
G78510 NA non-coding upstream 88173 17463477 ~ 17464018 (-)
AMCG00010169 cnot6l,LOC107752360 other downstream 77286 17282646 ~ 17295515 (-)
AMCG00010142 LOC104932682,LOC108255669 other downstream 1148760 16209319 ~ 16224041 (-)
AMCG00010082 NA other downstream 3902546 13347541 ~ 13470255 (-)
G77544 NA other downstream 5643636 11728503 ~ 11729165 (-)
AMCG00009989 NA other downstream 9051457 8314109 ~ 8321344 (-)
AMCG00010183 stoml2 other upstream 98525 17473829 ~ 17478791 (-)
AMCG00010188 NA other upstream 465403 17840707 ~ 17844389 (-)
AMCG00010190 NA other upstream 477563 17852867 ~ 17855821 (-)
G78610 NA other upstream 569931 17945235 ~ 17945761 (-)
AMCG00010206 NA other upstream 1487964 18863268 ~ 18872082 (-)

Expression


Co-expression Network