AMCG00018217


Basic Information

Item Value
gene id AMCG00018217
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4641158 ~ 4646266 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018217
ATGGACGGCAATGTAGGAGGTATAAACGATCTGCAGGAGCAGGTCCACCGGCTGACCAATGAGAATGGCAAGCTGGGGCGACTGGCCGGATCGAAGACCGACCTCTCCTCCAAACTGGTCTTCAGCGAGGAAGAGAAGCTAAAGATCTCAAAGGATCTCATCGAGGTGCAGATACAGAGCAACAAAATGAGGGAGCAGCATGAAGCCGAGAACTTCGAACTGAAGAATAAGatCTTGTCCCTGGAGAATCAGCTGGTGGAGCTGGAGATGGAGCGGGACAGGCTGAGCCGGGACAGCCAGGCCGCCGCGGGGCACCTGCAGGTGGCCGAGAGGAACCACAAGGAGCTGGCGGACGAGTACATCACCCTGAAGAGCAACTACTTGGCCCTGTGCAAGGAGCACGAGCAGGAGGTTTCTCGGAACGAGGAGCTGAGCGCCGAGCTGCTGGGCCTGGCCCGCGCACAGGACGCCCTCCTCAAACAGCAGGACAGCCGGGCGCGGGCGCAGACACTGTACGGGGAGACTGCCCAGGAGCTGGAGAGGGTGCGGGCGCTGGTCAGCCGTCTCTCCCAGCGCAGGTCCCGGCCAAAGGAGCTGGCAGCGTCAGAACAGGATCGCAGAGCCCTGGAGAGAAGCCTACTGGGGAACCAGGACCAGATCAAGGAAGAGCTGGAGAGAATGAAGAGGAGCTATGAGGAGCAGCAGCACAACCTGGAGGAGAAAGTCGTGGCCATGGGCAAGGAGCAGCAGGCGAACAAGAGGGCCATCCGCAACACGCAGCACAAACTGGCCGAGCAGTCTGCGGCTCTGTTGAGCTCCCAAAGCCAGCTGAAAGAGGTGGAGGCGGAGAACTCCAGGCTGCAGCTCCAGCTGAAGGAGCTCAATGAGGAATATCGTGCCCGGCTGGTTCGCTACCTTCAAGACCTGGCCGTGAGTATCGGAGCCTCCGCTAAGAGCTCCGGTATCGAAAGAGGGCTCTTCCTAGAGTACGTGGACGCGTCTGCGGGGGGCCAGGGGGCCAAGAGACCCCCAGAGAAGTCCAAGATGAAGACCTTCGTGGACAACATGTTGCAGGACGTCAGGGCCTCCTACAGGTCTAGGGAGGAGCAACTGGCCGGGGCCGCCCGCGGGTACAAGAAGAGACTGCAGCGGCTTGTGAGGACACACGAAACCCTGCTCATCGCCTACAGAATGCAACGGGAGCAGATCCTGGCCCTGGGCGAGCACAGCCTGGACCCCGGGCCCCCCGAGTCCCACTTTGGCCTCCCTGAGGGTGAGCTGCAGAGTGAGCAAAGCCGGGAGCTCGGCCGCCTGCGAGAGGACAAGGCCAGGCTGGAGAGCCGGCTGAGAGACGCTCAGGAGCAGAAGAGTGTCCTTGAAATCCAGCCTCAAAGCGTCTCTTTCCAGGAgtcagGAACAGCTGGGAAGGTCACAGAAGACACCTGGAGTGACATCAGAAAGCAGCTGAGGGAGTTCACACATTCAACCCAGGAGGAGCACGAGAGGGAGCGAGCCCAGCTCCTCACCCGGGCTGCGGTGGCCGAGGAGCAGGTGTCCGAGCTTCAGGAGTATGTGGACAAACACCTGGCCAGgtACAAGCAGGAGATCATGCGGCTGCGGGAGCTGATGGGCACCGATACAGGGCGTGCCCACAGCGCGGACGCCCCCGAGCCACGATTCCAGCGCCGCGGCAAAAGGAACCCCAGCTccgacctctga

Function

GO: NA

KEGG:

id description
K23693 CCDC78; coiled-coil domain-containing protein 78

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018217 True 1719 mRNA 0.61 15 4641158 4646266

Neighbor

gene id symbol gene type direction distance location
AMCG00018218 NA coding upstream 1289 4629400 ~ 4639869 (+)
AMCG00018215 tmem204 coding upstream 20871 4610842 ~ 4620287 (+)
AMCG00018212 NA coding upstream 56246 4569833 ~ 4584912 (+)
AMCG00018213 decr2,LOC107677236,LOC107667207 coding upstream 111819 4526000 ~ 4529339 (+)
AMCG00018214 NA coding upstream 116820 4518463 ~ 4524338 (+)
AMCG00018225 NA coding downstream 85882 4732148 ~ 4737892 (+)
AMCG00018224 NA coding downstream 101044 4747310 ~ 4748167 (+)
AMCG00018231 amdhd2,LOC107661858 coding downstream 170564 4816830 ~ 4819594 (+)
AMCG00018233 NA coding downstream 228661 4874927 ~ 4883853 (+)
AMCG00018235 NA coding downstream 326684 4972950 ~ 4994168 (+)
G114985 NA non-coding upstream 47313 4593460 ~ 4593845 (+)
G114984 NA non-coding upstream 51084 4589295 ~ 4590074 (+)
G114940 NA non-coding upstream 254269 4386180 ~ 4386889 (+)
G114888 NA non-coding upstream 339480 4298638 ~ 4301678 (+)
G114868 NA non-coding upstream 443108 4194277 ~ 4198050 (+)
G115061 NA non-coding downstream 167752 4814018 ~ 4814419 (+)
G115099 NA non-coding downstream 448882 5095148 ~ 5100938 (+)
G115188 NA non-coding downstream 670187 5316453 ~ 5317925 (+)
G115201 NA non-coding downstream 698221 5344487 ~ 5344947 (+)
G115331 LOC100136012 non-coding downstream 1399764 6046030 ~ 6046534 (+)
AMCG00018216 telo2 other upstream 37053 4594933 ~ 4604105 (+)
AMCG00018196 NA other upstream 447828 4186410 ~ 4193330 (+)
G114551 NA other upstream 1993384 2640846 ~ 2647774 (+)
G114518 NA other upstream 2072220 2491313 ~ 2568938 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 2374383 2247853 ~ 2266775 (+)
G115049 NA other downstream 115252 4761518 ~ 4763905 (+)
G115299 NA other downstream 1303197 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 1509222 6155488 ~ 6160616 (+)
AMCG00018280 NA other downstream 2064216 6710482 ~ 6747438 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 3247361 7893627 ~ 7894449 (+)

Expression


Co-expression Network