AMCG00018225


Basic Information

Item Value
gene id AMCG00018225
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4732148 ~ 4737892 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018225
CTCTGAGTGGCTGCCAGCTGCAGGAAGCAAAGCGACCCGATGTGATAAATGAGCTGAAAAAGTCTCTCACCAGCAGCTGTAGTTTCACGCACACGAATCAAGAAAGAGAGCAGTGTTTGATCATCACACCGACCCGCCTTTCAGCGATCGTTTCTTTGCAAAACTGATGGAAAGGCTGCTGGCGATTTGTCTCTTATTCGGCTCTTTACCGGCGGAAACTCGGGGTTTGGATGCCGAGACTGAGTTGACGACTAGCGATGGGGGCTGGGTCTCCAGCCCAGAGTCCAGCCTGGCCGAGGAGGGCCCGTGCAGCATCGCGATCAGGGACCAGTCGCTGACCTACTCGGAGTTCATTGAAGAATACGCTTATTCCAAGCCTGTCATAGTCAGAGGTCTGTCTGATAACACCAAGTTCCGGTTCCTGTGCTCAAAGGCCGCCCTCCTGCAGCACTACGGGCCTCGGCTGGTCCGCCTGAGCACAGCCAACACCTATTCCTACAGGAAAGTGGACGTGCCCTTCCAGGAATTCGTGGAGCGCCTGCTGAGGCCGCAGTCCCCGGACACCCTGGGCAGCGACACGCTGTACTTCTTCGGAGACAACAACTTCACCGAATGGCACTCGCTGTTCCAGCACTACCGGCCCCCTCCCTACGCCCTCCCCCACACCAGTGGAGCCTACAGCTTTGGGATCGCAGGGCCCGGAACAGGGGTCCCTTTCCACTGGCACGGCCCTGGCTATTCGGAGGTCATCTACGGGAGGAAGCGCTGGTTTTTGTATCCACCTGAAAAAGAACCCCATTTCCACCCCAACCGGACCACCCTGTCCTGGCTAACGGACACGTACCCCTCGCTGCCCCCGGACGAGAGGCCCGTGGAGTGTACCATCCGCCCAGGGGAGGCGCTGTATTTCCCTGACCACTGGTGGCACGCCACTCTCAATTTGGACACCAGTGTCTTCATCTCCACCTTCCTGGGGTGACGTCTTGATTCCGTAGGCGCCGAGTCTGCTTCTCGCCGGCTTCTAAGGAAGAGGACTCGATTAACCTAAAACCACACGACCTTTGGGACGCATTTTGACCCCTCACGTGGCCAGTTTGTGCTAAAGAAGGGCTCAGAGCCGAAGTGAACCCGAGTCCCAGCTCTAATTCAAGGtccatcaccacgctgacatggTTTATTTTTGACACAATGATGATCAGGGTTAGGGGGCTCCACTAAGAAATAAACGGTAATACactaaacacaattataaacacaacatgcaacgattttaaagatttacagttcatataaggaaatcagtcaattgaagTCCATTCACTCAAGTTGTGAGGGGGGCGTGCGATGGGCTGCTGACCACAGGactgtccaccagagctgcagtcgggTCCAGACCCTGGCGAGGACGATGAgccgcagatgagcttccccGAGATGCTTTCTGATCATTTGTGTAGAAGTTTTTCTGTTGTGCGAACCCACGGTGTCACCGGCTGTTCGGTGAGGCTGGTCTCAGATGATCGGGCAGGTGGAGAAGCtggatgtggagtcctgggcttATAGTAGAGCAATTAACATTCAATTCTAtggcagcagctctggtggacatccCTGAAGTCGGTAGCCAATCGCACGCTCCCTCACAACGGGAGACATCCGTGGCATTGTGTTGCGCGACAAAACTGCACTTTTTAGAGCAGCCTTTtgttgtccccagcacaaggtgcacctgtgtaaacGTTCATGCAGTTTAATCGACTTCCTGATACGCCACACCACTCTACCTCTGCACCAAAACCAAAAATTGTAGTAGAATCTTCCTTTGTAACTGCCAGTCcctctgcatgtgtgtgttataatctgtttattgtattacttgATTTTGTATAGGTCAACTTTTTATGCAAGATGTCTTGAaagtaataacattttatttggcaGATGCCTAttacctgtcaggtggatgggtTTTCTTGGAGAAAGAGCGCAATgttcactaacagggatgtaaacaaacgTGTGCACAACATGCGAGAGAAATAACCCCTGGGCTCTTTTATTTCAGCTCCTGAAACACGGGACCAACACttgttgcgtttatatttttgttcagtatatatttttcaattggTTTATTCAaagatttaattgaataatttaaagacACGAGTGGAGGCTCTGCCAACGCTGGACCTGAGGACATCCGATTACACTGGCCTCTGTTCTTCTGCAATAAAAATCTTCATGCAGTACAAGGTCTCCTTTGCCGTTTGAACAGCAattcaaaagaagaaacaagTATGTCCTTGGTTTGtaatatataatctttattaACTCACCATATTTAAGATTAGATACCACTTGGTTGCAGTGAAAGCCACTGGATCGGAAGGCGAAACAGCTGGCTGATTACGTGACATTCATATCGACACCGACCAATAGATACAACGGGCTTGCCCCGATGACGGTGACACggaaacacaacaaacaccAGTCTGCCGATTTCAGAacggagagggggagaaaaaaataataaagtgaggATATGGGTCTATGACACAGAAAAGCAGGCAACAACCACACAATCACAAGTGACCTGCCCCAGAGGAGGGGTCTGTAAACCAACGTGGTCTTCACCGCAGAAATCTGAGCTGCTGCTATCACAGTTACCTTGAGGGGTTTACTAGTTTAAATCATAAAGGGCGAGTATCTCATATAGACCAcggttttgaaaaacaaagcctCAACGGTGCTCTGTTTCAGAACATCGTCAACTAGGATAACGCACGTGCTTTATGGAAGAAAGTGGCTGCACAGTCTGTCGTGGCAAAGACGTTATACTGATGAGAGAACATCCtacatcctctctctctcctctgctccaGTAAAGCAGCACTAGACCACGACCTAAGAGTGTCAAAGACCACGGCAGCCCATGGCGAACGCGGGAGGAACGGGCCTGCATAGCGTACATCTGTAAATCGGAGCTGGAACGCACAACAGAAACATATATGAGGTCTTCAGTATCGAAATGAACAAACCCAGCAGCGGAGAAAATAACAAAGACGTCGTTTCAAACCCAGAAATCACAGGTGAGGAAATGGCTGCTGGAAGCTGGAAGCTGGGAGCCACACTTTCAAACGAGCGTTGgctgaaagcaaagcaaaggcTGTGAGGGCTGCAGAGTTGGCCTTACTTTTTGCAGAGGTCAGACACAATGCAAACAACTTCTGTCTGCTCTGCCAAAACAAAGTTGTGCGTTCAATTGTGTCGACATTTCCGATAAAGAAGTcgtatctttaaaaaaaaaaaaaaggtatcaATACATAAACCCTGAAAAGGTGAATGACATAAATCTAACAAACAGCTTTGAAAACGTTTACGGATCCTAACATATTGACAAGATATCCTGCAGatgttaatgtgatttaaagATCTAGAAGATTCTTATGCCAGTTGTAATAATTTAAGTTTTGTTTCACCTCATACCTGTGAGGCGTTgctgcacacaaaacaaaacaaaaaaacacccaaatcGGGCATGCTCAACATTTCTGTGTTCTCAGAGAACAGGTAGCTGTAGATGTAAACGACACATTGCAATAGACAAAGCCAGGTTTCCAGTGAACACTAAACTGGCCACACTATCCAGGTCCTGACTGTGCGATTGTGCATCTCTGTTGTACGAACGGGGCTCAAGGGATACAGCATCAGACATGATTAAAAAGGAGACTTCAGCCCCTGGAAACATGAGTGACTCGTAATAATCTGAACATCTGGTGAATAAAATCgtggggaaaagaaaacaccTTGTCAAGCAAATTTATTTACAAagcaacaaatgaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018225 True 3862 mRNA 0.48 9 4732148 4737892

Neighbor

gene id symbol gene type direction distance location
AMCG00018217 NA coding upstream 85882 4641158 ~ 4646266 (+)
AMCG00018218 NA coding upstream 92279 4629400 ~ 4639869 (+)
AMCG00018215 tmem204 coding upstream 111861 4610842 ~ 4620287 (+)
AMCG00018212 NA coding upstream 147236 4569833 ~ 4584912 (+)
AMCG00018213 decr2,LOC107677236,LOC107667207 coding upstream 202809 4526000 ~ 4529339 (+)
AMCG00018224 NA coding downstream 9418 4747310 ~ 4748167 (+)
AMCG00018231 amdhd2,LOC107661858 coding downstream 78938 4816830 ~ 4819594 (+)
AMCG00018233 NA coding downstream 137035 4874927 ~ 4883853 (+)
AMCG00018235 NA coding downstream 235058 4972950 ~ 4994168 (+)
AMCG00018234 LOC106579194,LOC106578326,LOC105031632,LOC103369159 coding downstream 284700 5022592 ~ 5023227 (+)
G114985 NA non-coding upstream 138303 4593460 ~ 4593845 (+)
G114984 NA non-coding upstream 142074 4589295 ~ 4590074 (+)
G114940 NA non-coding upstream 345259 4386180 ~ 4386889 (+)
G114888 NA non-coding upstream 430470 4298638 ~ 4301678 (+)
G114868 NA non-coding upstream 534098 4194277 ~ 4198050 (+)
G115061 NA non-coding downstream 76126 4814018 ~ 4814419 (+)
G115099 NA non-coding downstream 357256 5095148 ~ 5100938 (+)
G115188 NA non-coding downstream 578561 5316453 ~ 5317925 (+)
G115201 NA non-coding downstream 606595 5344487 ~ 5344947 (+)
G115331 LOC100136012 non-coding downstream 1308138 6046030 ~ 6046534 (+)
AMCG00018216 telo2 other upstream 128043 4594933 ~ 4604105 (+)
AMCG00018196 NA other upstream 538818 4186410 ~ 4193330 (+)
G114551 NA other upstream 2084374 2640846 ~ 2647774 (+)
G114518 NA other upstream 2163210 2491313 ~ 2568938 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 2465373 2247853 ~ 2266775 (+)
G115049 NA other downstream 23626 4761518 ~ 4763905 (+)
G115299 NA other downstream 1211571 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 1417596 6155488 ~ 6160616 (+)
AMCG00018280 NA other downstream 1972590 6710482 ~ 6747438 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 3155735 7893627 ~ 7894449 (+)

Expression


Co-expression Network