G17373


Basic Information

Item Value
gene id G17373
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 8846966 ~ 8855733 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU19498
AGATTGTTTCTGAAACGCCAGTGTAGACGAACATCACTTTCATTTTAAACCACTGTTTTAAAACGAAAACGCAGTAGTGTAAACGGGGCATAATCTCCATCCATTGTAAATGAATAGAGAACAGAATAGAGTCATACAGGTATGGAAGGACATGAGGGTGAGTAAATAATGACAAATGTTTCGTTTTTGGGTGAACTAATCTTTTACCTTTATCAACACACAAATATATTGCTTTTGTTGCACATTTTATTAAAAATATAAGAGACAATATGCAGTCTATAATGTAACCCACTATTTGTGATTTGATGATGGAAGTTTACAAGAGTGAAAGAGAAGCAACTCTATCCTTGAAATGACTGAACCAACATTTTATTTTGGCATTTTTGAAATACAAGAACCTTTTCAAACATTACAAGTTATATTGCAAGTACAAATGATCAATACAAAATTAGAAAGTTGTTCAGATTCACAAGGGGCAGAAACAGGTTGTTAAAACACCAGCACACAAGAGTTAGTGATGAGGTAAAGAACCAGATCTAAACCTTATTAACTTTACATTCACCGACAGAAACACATTATTATCTGAGTATTACAACATTGGTGGTATTGTGAAAACAGGACCAAAAAGTTTGTCACTTTGTCACAACCATTTCTTCAACAAGTTGACTTGGAATTTTTAAAGATTCTGTTAAAATATTAAATCTATTTTACTATGTATAAATTTAAAGCTTAACAGTTACCCTATGAGATGTGTAAAACAGCCCCAAGTGACACCATGTATATTTCCAGACATTTCAACACCATCGATTGAAGCGTAGTTGTTGCTCTGGAATCTTGAGCTTTGCTCACCATCTGACAATGAACTTTCTGCATTGTAGGTTATCTTTATCAGGGGTCATCTTTGCGACAGATGTTATGTACATTTGAATTGTCTGTCTTTTCTTATTTGAAACATAATATAGTCAAAATGCCCTGGACTTCATTTCCAGCATTTGCAGTATGTTAAAAAAAAAAATGACCGGAGAAACTGACTAACTGCAGTAACCAGTTCATCATTATTATCTCTGTTAAATTTAAATTCCAAGTTAAATTGTGTTATGAATGAATAATCATGTAAAACAAAAACACAGGGATGAGCAAATAAAATATTGCGGGCAATGGAAGTGTTGAATTTTGTTAAGACATTTACGACATTAACAATTTAAAAAATAACATTATTATTTTGACTGCTCTGTTTAGCACTGTTGAGCATAAAATTTTATAAAAATAACACTTGGGCAAGATGGCATGACTTTTTTTTTTTTTAGAGAAATGGGTTAGTTGACAGTTATATTAAATTGTTTGGTTATACAGATATTTCCATGTTACAGTTCTGCTGGATAGAGACTGTACCATACTATTTTATTCACATCCGTTCAAATATCCCTCATTTTTACACAATTATTGTGAAATAAAACAAATAAATCTATGAATCTGACGATGTCAACCCTGCTCTTTTATACAGTACAGAATATGAATATATTTTATAAGTTTGAGCATACATTGCTTACTCTAGACATTTTTCCAGACAATGTGTCAAAATATGGAAAACTTTGACAGCCCAATTTAACTCACAATAAAATTACATGTCAAAGGATGAATAAGATGTCAGCGTTAGATTGAATCAGCAGGAGGGTTCAAAGAGGAGTTGAATTGCTATTAAATGTAGTGCTACTAAGATACAGAAAATCTTCAGTATCTTTTTAAATGCTATTAAAACAAAATGAATAAAACTCACATAAATCAAGACAAATCTCTGGATATTTCAGCACTCTTAGCTTAAATGCCCACTTTTGTACGTGGTCTTGACGATGAGTATTACTGTAATCATGTAAATTTATTCAGCTACATGTGAAGTGTTTTTGTGTGTGAGCAGAAAGTTCTTTACATGTAAACCATCTGTGTTTCGGCAAGAAATTAATGGATAGGAAAAGTTTGTTGTGCTCTGATAAATTTAGACAGTGTCTTTTTACACATAACATTTATACATCTATAAACTGATAAATATTTTAATATTCTTCATAAAACATACAGCTTCACACACGTTTCATACAAGGATTTGACAGAGAAAATGGTTTGTTCGTAGTATAGCACGACAAATCCATTTGCATTCTCTTTTTCTCACTCACACAAAACATTGTCCTTTTCCCTCAATATTTTATATCCAATCTTTTCTGACTTTATTCTTATAGGACTTCCAATAGTCGATCCTACTTTCATCCACAAAGACGCTTGCAGCATTGTGCGGAAACTTCTGTTTGCACCACTTGCAGAACACCGCCTCGGATTTCAAATGCTTCAGGAAAATTCATATTGGAAAGAAACATCTCCGCTGACGATACCAAGCTATTCTAGGAACACAAGTTGGCTTTGTAGAGTATTCTAGTTTGTACAACATTTCCAAGAATCGACTGAGGATCATATGGACTGGAACAGCTTGAACATGAGGAACATCGGGGCAAAGATAGCAGGGTCTGATCTTAGATCAGCGTTTGGGAACCATCTAAATCAACCCGTAGGGGAAAGTGGAAGTAGCAGGGCTCTCGTTTTCATCGGACAGATAAATGGACAACAGCGAGGATGCCGAGCCTGCTCCACCAGGGGGTGCCAGTGTGCAATTGGCTTACGGGGGTATGCGAGCATCTCATTCCAGTGGTCTCTACCTAAACCTTCAGCACCAGAGCCCAAACGGCACACGCCAATTATCTCATTGTGGCCCACCCTGCAAGATAAGATTTTTTTTGTTACAGAATTATCTGTTTAATTTATCCAAATAATCACATTCATACTCGCAATGAATAATGTAACAAAGTTTGTAGGACCCAAAAGCATTTTGTTAAAAGACAATGATATGTGTTTTTGCCTGCCAGTGCAACTAACCTTTTTTGCACCAAGGTATGCGTGTAAAAATATGTGCATATTCAGACTCAGAGAGAGTAGCTGAAGTGCCACAGGATAAAGAAATCAACATACATTTACCTCAGTGGTGCTGAACTTTACGTGAGTCCTTTTGTGAACCCAAGGAAGAGAACTGTGAAATAGCAGTTCCTGACATCTAATCGTGTGTGTGTGTGTGTGTGTTCTTGTCTTGGACACTAACAGACTGACTGCTTGAGACTTGAGAATGTTGGGTAAAATGTATGCACCTGGTTCTTTGAGCAGTTACCCGCCTGTAGAGAGGTGAGTGGTGAATGCTCTGACGTCTGACCTTTTCCTCTTCCTACTTGAGCACATGTACCATGTGATCATTTTGATGTCTGGTGATCCTGCTATTCTAATATATCCTATTCAGGTTGTTTCAATATTTCAATATTTCTCTTTTTGGGTTGTATGTCTTGAGTTTCATGCACAAATATATATAACCACCATTTTGTAAAATGCAATAAAATGAAGAATCTGTGGTTTGTTAATTCTCTTGAACCTTTTTTTTAACTGACGAAAATACAAAGAAAATATTTCCCAATGTTTTCAACTTACCAACTTAATTGTATTTTGTAAATATAAACAAATTTTGATTTTGATGGCTGCAACACAGTCCAAAAAAGTTGGAACTGAGGCATGTTTACCACTGTGTCACATCACCTTTCCTTTTAAATAAACTTTTCAATCATTTGGGAATTGAGGACACTAATTGTCGCAGTTCTGCAAGTGGAATTTTTGCCCAATCTCACCTGATACAAGACAGCTGTTCAACAGTTTGTGGTCAGTGTCTGATTCTCTTTTTCAATTAACAAACCATAGATTCTTGATTTTATGGCATTTTACAAAATGTCCCAACTTTCTGGAAATAGGGTTGTATATCAACTATGTTAAATATTAAAGGCATAGTTCAGCCAAAAATAAAATTCTCTCATCATTTACTCACCCTCATGTGATGTATATGACTTTCTTTCTTCAGATAAACACAAAGATTTTTAGGAAAATAATTAATCCATACTGTATAATGCAAGTGAATGGGTTTTGCTCATTTGACGCTTGAAACCCCATTGTGAAAATCATTACGGTAATCCATATGACCCCAGTGGATGAATCAATGTCTTCTGAAATTAAATGATGTGTAAGAAAGATACTAATGTTTTAAACCATTGCTTCTTTCCTATGCACATTCACAAGTTCAAATTGACACACGTAAGTGTGCAAGAAATAACAAGTAAGCACAGAGGACCACCACTTCTCGCTTGAGCTTCACAATGCACTTATGTCACGTGTCACAACGTCCTTCTTGTGAACGCTTGTATGACAGACAGGAAGCAATGATTTTAGTTAAAAAAATGAAAAATATTTGCATTTTTCTTACACATACCTACAAGGGTTGGACAATGAAACAGAAGCACCTGGTTTTAGACCACAATAGTTTATTAGTATGGTGTAGGGCTTCCTTTTGTGGACAATACAGCATCAGTTCGTCTTGGGGATGACAAATACAAGTCCTGCAGAGTGGGCAGAAGGATTTTGAGTCATTCCTCTTCCAGATCAGTGGCCAGGTCACTATGTGATGCTGGTGGAGGAAAACGTTTCCTGACTTGCTCCTTCAAAGTTCCCCTAATGTGACTCAAATATATTTAGATCTGGTGACTGTGTTCAACTTCACTTTCATGTTTATCAAACCATTCTGTCACAAGTCTTGCTGTATGTATTGGTGCATTATCATGCTGATACTACAATTCAGGGTACAATGTTTGAACCATTAGTTGCACAGGGTGCTCCAGAATGGTTTGGTAGTCCTTGGCAGTGACGCATCCATCAAGCACAGTAGGGAAGACCATGATATTGCAGCCCGGGTGGATGTGGTTCATCCAACGTGGTGGTATGCCGACATAACCCTGGATATCATCTCTCGATACACCATAAAGGCTTGGTCCTGGTCACAGATGAGCCAGATGTGCACCAACAATTTGGATGGCAATATTTTATGTACAGCTGTGCTATCGCTCTGCTAATTCAACCTTCACACTCTGCTGTTATTGATGGAATGTAAAACCGGTAAAGATTGGCCACCAGTCTTTGAATCCATGCGCATATAAAGGCATGAAACCTCCAACAATATATTGGTCAGTGTTTCAGTTTCATTGTCCAACCCCTGTATCGTTTCACTTCAGAAGACATTGATTCATCCAGTGGGGTCGTGTGGATTACCATCACAATTGTTGTGTGTGGTTTTTTAAGGAAAGGAGTGGAACCCATTCAATGGCATTTTATGGACTCACAGAGATGGATTATTTTCCTGAAAAATTTTGTTTGTTTTTATCTAAAGAAAGAAAGTCATATACATTGGTAATGTCATGAGGGTGAGTTTTTCCCCCATGCAATTATAAAGAATGAGGGCTTTTTCAAGTTTCAAAAAAGATGCAAAATCAAGAAAAAAGTATAATAGTCCAGACTTGTGAATTATATATAAGCCTTCTGAAGCCATACAATAGCTTTGTTTGAGAGAAAGACTGAAAATTGTTATTTGCAACATGACAGTGTTACAGGTAATCTGTCATTTTTTGTTTTTGGGTTGGTTGGACATGTGTTTTAGTTCAGTTTCCTGTGTTTCAGGGTATGTTTATATGACAACAATGTACTAAAAACTGAAAAGTTTTTTTTCACACAAATCTGCAAAAACAATTAAAAACGCTGTATTATGCATGCCAGGCCAGTAGTTGGCAAAGTCACTTTGTAAAGAAAAACTACCCACCTATGAACTGAATACGTAATATGTGCATGATGTCGCCGTTTTCACAAATTTGCGTTTTATGTAGTTTACACAAGGAGACAATAATGGTATCATTTTCAAAAACTTGCACTTTGAAACCCATTTTCAAAAGTTTGCGTTTTCAGGCCCCCCAAACGTCATTGTCATGTAAATGAACGGCCAAAATGTTTTTAGTTGAAAATGGTGTTTGTTTAAATGGCCCCTCAGTTAGTTTCTATGCTTTCTCATTGATTTGATTATTATGTGCACCTGCTATTCATTTCATTGCTTGGTTTGTTTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU19498 True 6018 lncRNA 0.36 2 8846966 8855733

Neighbor

gene id symbol gene type direction distance location
CI01000001_08841482_08845223 OLFML3A coding upstream 1333 8840862 ~ 8845633 (+)
CI01000001_08785318_08810381 FAM132A coding upstream 36585 8785318 ~ 8810381 (+)
CI01000001_08748236_08757869 NCKAP5L coding upstream 88963 8748236 ~ 8758003 (+)
CI01000001_08721737_08727450 KANSL2 coding upstream 119196 8721737 ~ 8727787 (+)
CI01000001_08714618_08721009 NA coding upstream 125784 8714618 ~ 8721182 (+)
CI01000001_08934325_08940532 KLHL21 coding downstream 78274 8934007 ~ 8941354 (+)
CI01000001_08950041_08960737 NA coding downstream 94308 8950041 ~ 8961071 (+)
CI01000001_08962231_08968219 CASP9 coding downstream 106498 8962231 ~ 8968227 (+)
CI01000001_08971649_08984224 NA coding downstream 114812 8970545 ~ 8984239 (+)
CI01000001_09039724_09045754 NA coding downstream 183991 9039724 ~ 9046115 (+)
G17441 NA non-coding upstream 9330 8837123 ~ 8837636 (+)
G17439 NA non-coding upstream 23857 8822875 ~ 8823109 (+)
G17423 NA non-coding upstream 62779 8783905 ~ 8784187 (+)
G17422 NA non-coding upstream 72897 8773828 ~ 8774069 (+)
G17394 NA non-coding upstream 83428 8761469 ~ 8763538 (+)
G17450 NA non-coding downstream 36132 8891865 ~ 8892113 (+)
G17469 NA non-coding downstream 55933 8911666 ~ 8912004 (+)
G17473 NA non-coding downstream 58858 8914591 ~ 8915126 (+)
G17474 NA non-coding downstream 59545 8915278 ~ 8915601 (+)
G17475 NA non-coding downstream 60137 8915870 ~ 8916107 (+)
G17234 NA other upstream 814483 8032124 ~ 8032483 (+)
CI01000001_07531945_07539781 NA other upstream 1306380 7531541 ~ 7540586 (+)
G15995 NA other upstream 3132015 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 3557010 5279837 ~ 5287698 (+)
G15794 NA other upstream 3782262 5061218 ~ 5064704 (+)
G17353 NA other downstream 360289 9216022 ~ 9228859 (+)
G17354 NA other downstream 378730 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 562595 9435836 ~ 9436373 (+)
G18896 NA other downstream 1384167 10239900 ~ 10241492 (+)
G18873 NA other downstream 1401379 10223879 ~ 10260714 (+)

Expression


Co-expression Network