CI01000004_08861514_08864815 (MGC81873, ACADM)


Basic Information

Item Value
gene id CI01000004_08861514_08864815
gene name MGC81873, ACADM
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8861240 ~ 8864815 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_08861514_08864815.mRNA
GTTTTGAGGGCGGGTGTTCGGACTGGACTCAGGTTTCAGAGTTCTGGTCCTCAAACTAGTGCCAAAGCAGCGACTGCTACCTTGAAGGGAGCTCATGGAGGCTTCAGCTTTGAATTTACTGACCAGCAGAAAGAGTTCCAGGAGTTGGCAAGAAAGTTTGCACGAGAGGAGATTGTCCCAGCTGCTGCATCATATGACAGAAGTGGTGAATATCCATTTCCTCTCATTAAGAGAGCATGGGAGCTGGGTCTTATGAATGGACATATTCCAGAGGACTGTGGTGGAATGGGTCTGGGCATATTTGATGCCTGTCTCATCACAGAGGAGCTGGCCTTTGGCTGCACTGGTGTACAGACAGCCATTGAGGCAAACTCTCTGGGACAAATGCCAGTCATTATTGCTGGTAATGATGCCCAGAAGAAGAAATATTTGGGCAGAATGACGGAAGAACCACTAATGTGTGCGTACTGTGTGACCGAGCCGGGAGCAGGCTCTGATGTGGCTGGGATAAAGACCCGGGCTGTGAAGAAAGGAGACGAGTATGTGGTCAACGGTCAGAAAATGTGGATCACCAATGGAGGAAAAGCAAACTGGTACTTCCTGCTGGCCCGCACAGATTCCGATCCAAAATGTCCTGCTAGCAAGGCTTTCACAGGCTTTATTGTTGAAGCTGATACCCCAGGAGTCCAGCCTGGCAGAAAGGAACTGAACATGGGCCAGAGATGCTCAGACACCAGGGGCATCACATTTGAGGATGTAAGAATCCCAAAAGAGAATGTTTTGATTGGAGAAGGAGCCGGCTTCAAGATTGCCATGGGTGCATTTGACAAGACCAGACCACCAGTGGCTGCCGGTGCAACAGGACTTGCACAGAGAGCACTGGAAGAGGCCACAAAGTACGCTTTGGAAAGAAAGACTTTTGGCAAGTTTATTGCAGAGCACCAGGCAGTGTCATTCCTTCTGGCTGAAATGGCCATGAAAGTGGAGCTTGCCAGGATGGCCTATCAGAGAGCAGCTTGGGAAGTGGATGAGGGCCGCAGGAACACCTACTATGCTTCGATTGCCAAGGCCTTTGCCGGAGACATTGCAAACCAGTGTGCCACTGATGCTGTCCAGATCTTTGGTGGGAACGGTTTCAATAGTGAATATCCTGTGGAGAAGCTGATGAGAGACGCTAAGATTTACCAGATTTATGAAGGGACTGCTCAAATCCAAAGGCTCATCATCTCAAGAGAACTTCTTGGGAGATTCAAACAGTGAACCTGTAAACCTAGGACTTCCATGCCAAGAGCTAATCGTTTGGTTTAGCTTCTTTTGTACATGATAATGTATTTGATATAATAGATCTCAGGATTGTATCTAACAGATTGTATATTGCCTATACAGAACTCAAGTTGCCTTATGTCATATCAGCATGCCTTGCCGTCTTTGTTTTTGTGGTGTTGAACAAGTAAGTTGATGAAATGTTAAGATGAACAAAGTAGTTACTGAGCACTTCCTCAATTTTTTAAATGGATTATGTCCTCAAAATAAA

Function

symbol description
acadm Predicted to enable medium-chain-acyl-CoA dehydrogenase activity. Predicted to be involved in fatty acid beta-oxidation and medium-chain fatty acid catabolic process. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Is expressed in female organism and liver. Human ortholog(s) of this gene implicated in medium chain acyl-CoA dehydrogenase deficiency. Orthologous to human ACADM (acyl-CoA dehydrogenase medium chain).

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process

KEGG:

id description
K00249 ACADM, acd; acyl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_08861514_08864815.mRNA True 1534 mRNA 0.47 11 8861240 8864815

Neighbor

gene id symbol gene type direction distance location
CI01000004_08857253_08860111 RABGGTB coding downstream 1129 8857253 ~ 8860111 (-)
CI01000004_08847888_08849951 NA coding downstream 11212 8846758 ~ 8850028 (-)
CI01000004_08714010_08716995 NA coding downstream 144181 8713882 ~ 8717059 (-)
CI01000004_08592797_08594424 CLDN11A coding downstream 266621 8592314 ~ 8594619 (-)
CI01000004_08587419_08590454 NA coding downstream 270683 8587327 ~ 8590557 (-)
CI01000004_08878465_08881325 BEST4 coding upstream 13650 8878465 ~ 8881485 (-)
CI01000004_08887155_08890419 NA coding upstream 20944 8885759 ~ 8890419 (-)
CI01000004_08896031_08915598 NA coding upstream 30760 8895575 ~ 8915662 (-)
CI01000004_08931605_08938354 NDC1 coding upstream 66159 8930974 ~ 8938354 (-)
CI01000004_08939621_08940367 NA coding upstream 74514 8939329 ~ 8940413 (-)
G29989 NA non-coding downstream 38763 8822269 ~ 8822477 (-)
G29986 NA non-coding downstream 45703 8813396 ~ 8815537 (-)
G29948 NA non-coding downstream 116834 8741906 ~ 8744406 (-)
G29929 NA non-coding downstream 185813 8675225 ~ 8675427 (-)
G29928 NA non-coding downstream 186175 8674825 ~ 8675065 (-)
G29955 NA non-coding upstream 7318 8872133 ~ 8873812 (-)
G29943 NA non-coding upstream 9882 8874697 ~ 8877199 (-)
G30009 NA non-coding upstream 114209 8979024 ~ 8980984 (-)
G30012 NA non-coding upstream 179610 9044425 ~ 9044678 (-)
G30013 NA non-coding upstream 185141 9049956 ~ 9050446 (-)
G29746 NA other downstream 503113 8354498 ~ 8358127 (-)
G29656 NA other downstream 895740 7964364 ~ 7965500 (-)
G29388 NA other downstream 2229333 6631293 ~ 6631907 (-)
CI01000004_06539836_06541252 NA other downstream 2315668 6538904 ~ 6541252 (-)
CI01000004_05617072_05627369 NA other downstream 3233726 5616644 ~ 5628289 (-)
G30316 NA other upstream 513122 9377937 ~ 9406921 (-)
G31203 NA other upstream 1881622 10746437 ~ 10750641 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other upstream 2542650 11406957 ~ 11412907 (-)
G32150 NA other upstream 2911704 11776519 ~ 11780951 (-)
G32207 NA other upstream 3511353 12376168 ~ 12384780 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location