CI01000004_08887155_08890419


Basic Information

Item Value
gene id CI01000004_08887155_08890419
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8885759 ~ 8890419 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_08887155_08890419.mRNA
ATGCCAACTCCCACACTAATGACAACAGTGCCGAAGCCATGGCAATGTTGCTATGCACATGGGATCTTTACCTCTCTGCTCAACCCGAGCAAGCAGATCCCTGGAGGGCTTGTCTTTTTATGCGGGTTGGGGATTCTCCAAATGCTGAGTGTGACTGAAGGAAGCATTGGGGGATGTGGGTGTCCAGCAGCCAGCATTTTGTCTCACTTTCCATCTAAGGTACCCAATGACACATGCTGCTTGAACTACTCAGGATCCACATTTAACCAGATGTCGTGGCCAGCTTTTTTGTCACATACACACTTGCAGGTTTTGGACCTGACGAACTGTAATATCAGTCACATTGATCACAGTGAGGTCGGTGACGCTGTCAGTTCACTGAGAGAGCTGTATCTCAGCCAGAACAGACTGACATCTCTCCCAGCTGACTTCCTCACTAAAGCTTATAGTTTGGAAGTGTTGGATTTAGGAGTGAATCATCTGAAGGATCTGCCTGAGCGATTTCTGCAGAACTCGGACAAACTGCGAGTGCTGATCCTGGGATGGAACCAGCTGAGCGCTCTGCCTCATTCAGCGCTTAAGCCTTCGCTAAAGCATCTGGAGCTCATTGGAAACCCCTGGGACTGTACATGCTTGCTGTGGGAGGGGCTTCAAAGTGGTCTGCATGACAACTCCAGCAGCCTTCAGGACCTCGTAGGTAATCTGACCTGTGCCTCTCCTCAAAATCTGGCAGGGCGGACGATTTGGTCTTTGCAGACCAGTGACGTGTGTCATGTGGCCAACCTGACCGCTCTCTTCATCCTGCTTCCCCTGCTCCTCCTCCTCAGTTTGGTGCTGTGTTGGTGCTGTGGCAGAAAGAAGAAGAGGAAAGAGACTCCCTCGTTCAGCCCAACTCGCAAAAGGGCCAACAACCCCCATTGCAATGGACGGTGGCCACATGCCAAACTGCCCACTGAGGAGTCAGCTGTGTCTGTCGACAGCGGCAAGGAGGTCATACTGAGGAACCAGCTGATGCTTCAGCCCTCGTCCACCCTGTTAGGCAGCACTCGGGATATTTATGAGGAGGTGGAGATCAAACTGGGCTCTGTGGACTCGCTGGCTCCTCCGCCGTCAACTTGCTCCACAGAAGGGACCGCAGGAAAGCAGGACCTGGACACGGTGAGTGTGAGTGAGGTGATGAAGGACTCGGCCGATCGGGAGAAGGCGTACTTGACCCAGTCCACTGAATACTACAGCCTGGTTCCCGGGATTGAAATTGAAGACTCCGATCATGGAGAGTATGAAAGTGTGGACCTCTCGTGACATTACAGGAAATGCCGCATTTGGTTGAAATACTTTTACTATGAAATACTATTGTTCCCCCAAAAATGAAAATTATCCCGTGATTTACTCACCCTCAAGCCATCCTAGGTGTATATGTATATATATGTATATATATGTATGTGTATATATCTTCATTCAGACGAACACAATTGGAGATATATTAAAAAATATCCTTGCCCTTCCAAGCTTAATAACGGTAGTGAACAGGGGCCGTGTTTTTAAGCCCCAAAAAATGCATCCATCCATCATAAATATAATCCATACGGCTCCAGGGGGTTAATAAAGGCCTTCTGAAGCAAAGCAATGGGATTTGGTAAGAAAAATATACATATTTAAAACTTTATTAACTAAAATAACTTCCGCCAAACAACCATAAGCGTACTGCACAAGCCGACTTGCGCCAAAAGAGTAACCCCGATGCGTTGTATGACGTAGGATGTAGGAGTAGCGTAAGCTTAGACACCTCTCGTGGTTCAAACAGAGAAGCTCCTCTTCTCTTATATCGAAATCCTCTGACATTTCTCTTTAAAATTTCTTGTTTTAGACTACGAGACCGGTGTTTTGTTTTGCTCTATCCTTTGAGCTTCCGCGTTCGTCATTGCATCATGCATCAGGTCAGAGGTTACTCTTCCGCCGCAAATCTATGCGTACGGCCGTCTGCTGAAAGCTAGTTATTATAGTTAATAAAGTTTTAAATATGGATATTTTTCTTACAAAAACCCTTCACTTTAGAAGGCCTTTAATTAACCCCCTGAGGCTGTATGGATTATATTTATGATGGATTTTTTGGGGGCTTCAAAACACGCCCCCACTCATTATTATAAAGCTTGGGAGAGCCAGGATATTTTTAAATATATTTCAGATTGTGTTTGTCTGAAAGAAGATAGTCATATACACCTAGGATGGCTTGAGGGTGAGTAAATCATGGAATAATTTTCATTTTTGGGTGAACTATCCCTTTAAGTACACTGGAGTTTTGTATCTCTGAATTTAATTGGATCACTGGTCATTACGTTATCCATGATTACGTTATCCATAAGGAAGTCACTGCGCCAGTGCGGACCCATTACTTTTGCATACAACGTGAATGAATTACTGTACTGATAAAGTGTCAAACAGAGCTGTATGCAGACTCAATCAGTCTGTTGCCAAGATAAGCTATCATATAGCTGTCGCCTGAATATTTTCATTATATCGAGATTTTTATATCTTCGTCATCTACTGTAATTTAGTTGGGAAGTTTTTATTATTGTAATCTTACTTTGTTTCACATTCAGTTACAGTGTTTAGTGTACAATGTATTTGGTGTCCCATATAATTTATATATCATATTATGAAGAGGAACAGTAACAGTAGAGAGCAAGAGAACATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_08887155_08890419.mRNA True 2698 mRNA 0.44 2 8885759 8890419

Neighbor

gene id symbol gene type direction distance location
CI01000004_08878465_08881325 BEST4 coding downstream 4274 8878465 ~ 8881485 (-)
CI01000004_08861514_08864815 MGC81873, ACADM coding downstream 20944 8861240 ~ 8864815 (-)
CI01000004_08857253_08860111 RABGGTB coding downstream 25648 8857253 ~ 8860111 (-)
CI01000004_08847888_08849951 NA coding downstream 35731 8846758 ~ 8850028 (-)
CI01000004_08714010_08716995 NA coding downstream 168700 8713882 ~ 8717059 (-)
CI01000004_08896031_08915598 NA coding upstream 5156 8895575 ~ 8915662 (-)
CI01000004_08931605_08938354 NDC1 coding upstream 40555 8930974 ~ 8938354 (-)
CI01000004_08939621_08940367 NA coding upstream 48910 8939329 ~ 8940413 (-)
CI01000004_08941940_08945864 YIPF1 coding upstream 51499 8941918 ~ 8945864 (-)
CI01000004_08953993_08957525 TMEM59 coding upstream 63433 8953852 ~ 8957525 (-)
G29943 NA non-coding downstream 8560 8874697 ~ 8877199 (-)
G29955 NA non-coding downstream 11947 8872133 ~ 8873812 (-)
G29989 NA non-coding downstream 63282 8822269 ~ 8822477 (-)
G29986 NA non-coding downstream 70222 8813396 ~ 8815537 (-)
G29948 NA non-coding downstream 141353 8741906 ~ 8744406 (-)
G30009 NA non-coding upstream 88605 8979024 ~ 8980984 (-)
G30012 NA non-coding upstream 154006 9044425 ~ 9044678 (-)
G30013 NA non-coding upstream 159537 9049956 ~ 9050446 (-)
G30024 NA non-coding upstream 206302 9096721 ~ 9096984 (-)
G30041 NA non-coding upstream 267026 9157445 ~ 9157660 (-)
G29746 NA other downstream 527632 8354498 ~ 8358127 (-)
G29656 NA other downstream 920259 7964364 ~ 7965500 (-)
G29388 NA other downstream 2253852 6631293 ~ 6631907 (-)
CI01000004_06539836_06541252 NA other downstream 2340187 6538904 ~ 6541252 (-)
CI01000004_05617072_05627369 NA other downstream 3258245 5616644 ~ 5628289 (-)
G30316 NA other upstream 487518 9377937 ~ 9406921 (-)
G31203 NA other upstream 1856018 10746437 ~ 10750641 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other upstream 2517046 11406957 ~ 11412907 (-)
G32150 NA other upstream 2886100 11776519 ~ 11780951 (-)
G32207 NA other upstream 3485749 12376168 ~ 12384780 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015478 NA non-coding NC_007113.7 CM002886.2 26513608 ~ 26519549 (+)