CI01000004_08896031_08915598


Basic Information

Item Value
gene id CI01000004_08896031_08915598
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8895575 ~ 8915662 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_08896031_08915598.mRNA
TGAATCATTTCTACAGTGGCCATTTATGATCCACATTTAGAGGGAAAGTAACTCAAAGAACAACATGAGGCCTGCTGGTCTCAGCCCAGCTGTTGCACAACTGGAACAGTGTGGCCTTGTTAACCGTGATGAAAAGTACCTGTCCTCTTTAAACCAAGCAATTCACATGGAAGCTCTGAAGATGCGTAGCTTGTCTGAGTCACCTGTGTCGATAATAACAGATGATCTTGATTTGGTCTGTTCCACAGAAAGAGCCATTGTGTCGTATTTCAGCGGAGTAAAGAGTGATTCATCCTGCACTTTCTCGGTTGGAGATAACGTATCACACGTTACAGACACATTGTCCCCTTCCTTATTCTGCTCTTCCATGTCATCCTTCAGTTCCTTCTCTCCATCCTTCTCTTCCCCTTCCTCCAGCCACTCATCTGGCTCAATGTCAGAGCTGTGTTTGAGTTCTCCATCCTTTTCAGCTCTCTGCGGTCCACCTGAGGCCCAGGACCTTCTCTACAGTTGCACGCCGCAGGAAAAACCTCCAGAAGGATGTTTGTATCCCAAGTCTCCTAAGCAAGAACCTGTTGTTGAATTTCATCTTTGTAACAAGAAGCTTCTAAACAAGGAAGAACTGCTTCAGTATCTCTGCAGTGACTCGGACACAGCCAAGGAACAAACCCAGCACCTTAATGTACGCAGTAGTCATTCAGAAGTACCTGAAGAGCTTCCTACATTGCAGCAGTTCAAGAATGGTTTGGCACCGAGTGGGATGCCTATAGTTGAGGGAAAGAATGGACACCATAGTGAAGAACAGCCATGTAAATGGATGGATTGTAGGGCTACCTATGGACAGAAAGAAGAACTGGTGAGACACATAGAGAAAGTTCACATAGATCAGCGAAAAGGGGAGGAATTTACCTGCTTCTGGGCAGGATGTGTCCGCCGGCACAAGCCCTTCAATGCTCGATACAAACTGCTTATTCACATGAGAGTCCATTCTGGTGAGAAGCCCAACAAATGCATGAAACCGTATGCATGTCAGCTCCCAGGATGCACCAAACGTTACACCGACCCCAGCTCGTTGCGCAAACACGTCAAGGTCCACTCCAGTAAATCCCTGCAGTCACAGGACAAGGTCCAGCTACGCAATAAGGTGGAGCAGGAAGTTGTGGACGTGTGCTTGGGCTTGCAGCATCTCCATGGCTCTACTCCTTCAGTACACAGCCCAGACTACAGGTGTCCTACCTCCCTCACTAAGATTCATCAGGAAGGCTTTACTGGTAGACTTTCTCCACTGGTTTGTGGAATCAACCTGGTCAGTGGTACCAATGAGCTCCAGTCTGTCTCTGAGAAACACATCTCCTTCCTAAACCCACATCAAAAACTCAACCAGATGTTTAATGAAGTACCAATAAATCAGCAAGTTTTTCAGGCCACTTTTAATCGAGTTGAGCAGATTTCCTGTAATGAAAGAGACGATCTGCATAATTTTGACCAAAATGGATTTCCTTTTACGTGTATAAACTCCTCTGGATACAGCTTAACTCAGGACATACAGTAGGTGCGTGGGAATCGCCCCTCCTTCCTGTCCTGCTCCGGTCAGGGTCTATATGAGCACTGCCTCAGTCAGATCTACTCTCTGTAGACTTGAGACACACCTTTGAACCGCTGCATCGGAGAGCAGAAGTGTAGGATCAAGGACATGAAAGCATGCGCTTTGAGGAAGTGGAGCAACATTCATTGAGAGATTGCTTGAGCATTGAGTCAGAGAAAAGAGAGACTCCTTGGGCACTGATGATAATGATGCAGCCTTATGTTTTGATGCTGAATAGACACTGTAGTTTTCTGTTTGAGTGTGCACAGAGAATGTTAGGAGATATGTTGTTTATATTGAGTTGGTATTTTAACATGACACAATTCTTTATATAACATGTTTTGTTGTATTTTCAGACATTAGTTTAATGTGTGACACAATATCACATCATAGTGTACCATTTTGCCGTCTTTCTCAAATAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_08896031_08915598.mRNA True 2008 mRNA 0.45 6 8895575 8915662

Neighbor

gene id symbol gene type direction distance location
CI01000004_08887155_08890419 NA coding downstream 5156 8885759 ~ 8890419 (-)
CI01000004_08878465_08881325 BEST4 coding downstream 14090 8878465 ~ 8881485 (-)
CI01000004_08861514_08864815 MGC81873, ACADM coding downstream 30760 8861240 ~ 8864815 (-)
CI01000004_08857253_08860111 RABGGTB coding downstream 35464 8857253 ~ 8860111 (-)
CI01000004_08847888_08849951 NA coding downstream 45547 8846758 ~ 8850028 (-)
CI01000004_08931605_08938354 NDC1 coding upstream 15312 8930974 ~ 8938354 (-)
CI01000004_08939621_08940367 NA coding upstream 23667 8939329 ~ 8940413 (-)
CI01000004_08941940_08945864 YIPF1 coding upstream 26256 8941918 ~ 8945864 (-)
CI01000004_08953993_08957525 TMEM59 coding upstream 38190 8953852 ~ 8957525 (-)
CI01000004_08958415_08969605 U2SURP coding upstream 42617 8958279 ~ 8969605 (-)
G29943 NA non-coding downstream 18376 8874697 ~ 8877199 (-)
G29955 NA non-coding downstream 21763 8872133 ~ 8873812 (-)
G29989 NA non-coding downstream 73098 8822269 ~ 8822477 (-)
G29986 NA non-coding downstream 80038 8813396 ~ 8815537 (-)
G29948 NA non-coding downstream 151169 8741906 ~ 8744406 (-)
G30009 NA non-coding upstream 63362 8979024 ~ 8980984 (-)
G30012 NA non-coding upstream 128763 9044425 ~ 9044678 (-)
G30013 NA non-coding upstream 134294 9049956 ~ 9050446 (-)
G30024 NA non-coding upstream 181059 9096721 ~ 9096984 (-)
G30041 NA non-coding upstream 241783 9157445 ~ 9157660 (-)
G29746 NA other downstream 537448 8354498 ~ 8358127 (-)
G29656 NA other downstream 930075 7964364 ~ 7965500 (-)
G29388 NA other downstream 2263668 6631293 ~ 6631907 (-)
CI01000004_06539836_06541252 NA other downstream 2350003 6538904 ~ 6541252 (-)
CI01000004_05617072_05627369 NA other downstream 3268061 5616644 ~ 5628289 (-)
G30316 NA other upstream 462275 9377937 ~ 9406921 (-)
G31203 NA other upstream 1830775 10746437 ~ 10750641 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other upstream 2491803 11406957 ~ 11412907 (-)
G32150 NA other upstream 2860857 11776519 ~ 11780951 (-)
G32207 NA other upstream 3460506 12376168 ~ 12384780 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016415 glis1a coding NC_007113.7 CM002886.2 26529447 ~ 26563978 (-)