CI01000004_08958415_08969605 (U2SURP)


Basic Information

Item Value
gene id CI01000004_08958415_08969605
gene name U2SURP
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8958279 ~ 8969605 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_08958415_08969605.mRNA
ATGGCGGTTGCAAAAAGAACACTAAGTAAGAAAGAGCAAGATGAACTCAAGAAGAAGGAGGATGAAAGGGCAGCTGCAGAGATCTATGAAGAATTTCTTGCTGCCTTTGAGGGAGGTGAAGGAAAAGTGAAGACTTTTGTACGTGGTGGGATTGCTAATGCCACTAAAGAGGAAGCAGCAGTCGATGAAAAGAAAGGAAAGCTCTATAAACCGAAGTCAAGAATTTTGGAGGCTAAAAGTTTTTTACCTTTGGATACTCCACCACAGTTTTTAACAATAGATAAACGCAATGAGGAGCGCGATGAGCGGCACAGGTTGAAGGGCCGAGTCAGTCGTTTTGAGCCTCTTCCCACAACGGAAGGAAGGCGATCCTTCTTGGATGATTCAGCTCCTGGGTCACATGACGTTGGTGATCCGACAACTACAAATCTTTATTTGGGGAACATAAATCCTCAGATGAACGAGGAGATGCTCTGTCAGGAATTCGGTCGCTATGGTCCTTTAGCCAGTGTGAAAATTATGTGGCCCAGGACTGATGAGGAGAGGGCCAGAGAAAGGAATTGTGGTTTTGTAGCCTTCATGACAAGAAGAGATGCTGAACGCGCACTTAAACATTTAAATGGCAAAATGATAATGAATTTTGAAATGAAACTGGGATGGGGCAAAGGTGTACCAATTCCTCCTCACCCAATATACATTCCACCTTCAATGATGGAGCACACCCTCCCACCACCACCCTCTGGACTGCCCTTCAATGCCCAGCCCAAAGAGAGGCTGAAGAACCCCAACGCTCCAATGCCTCCCCCTCCAAAGTGCAAAGAGGAGTTTGAGAAGACTCTGTCGCAAGCCATAGTCAAAGTGGTTATCCCAACAGAAAGGAATTTGCTCTCTCTCATCCATCGAATGATCGAATTTGTGGTGCGTGAGGGTCCCATGTTTGAAGCCATGATCATGAACAGAGAAATCAATAATCCGCTCTACAGATTTTTATTTGAAAATCAAAGTCCAGCTCATGTCTATTACCGGTGGAAGTTATATACCATATTACAGGGCGAATCTCCAACAAAATGGAAAACGGAAGACTTCAGAATGTTTAAGAACGGTTCTTTCTGGCGACCGCCACCTCTCAACCCATATTTACATGGCACTCCTGAAGACGAGGAACGTGATGATGACGAAGAAGAAGAAAGTGGCAAGAAGGGCACCTTGAAAGACGATGAGAGGGATAAACTGGAGGAGTTACTCCGAGGTCTCACGCCGAGAAAGAGCGACATAGCTGACGCCATGTTTTTCTGCCTCACACATGCTGATGCAGCTGAGGAAATAGTGGAATGCATTGCTGAGTCTCTGTCCATACTTAAAACACCTCTGCCAAAGAAGATTGCAAGATTATATTTGGTGTCGGATGTACTGTATAACTCGTCAGCAAAAGTTGCTAATGCCTCCTATTACAGAAAATTCTTTGAAACAAAACTTTGTCAGATATTTTCTGACCTAAATGCCACTTATAAGACAATACAGGGCCATTTACAATCAGAGAATTTCAAGCAACGAGTAATGTCCTGTTTCCGTGCGTGGGAAGACTGGGCAGTGTATCCTGATCCGTTCCTGATTAAGCTTCAAAACATTTTCCTGGGACTCGTCAGTCTCGATCCTGAAAAGGAGACTGAAGAGCTGGTGCCAGAGCTACCAGAAAGGACTGAGGACATTGATGGTGCTCCTATTGTGGAGGAGGAGCTGGATGGTGCTCCTTTGGATGATGTTGACGGCATGCCCATCGATGGAGCGCCAATTGATGGAGCACCACTCGATGACCTGGATGGAATGCCCATCAAGGGATCAGATGATGATCTGGATGGTATTCCCTCTGTAACCACGTCAAAATGGGAAATCTTTGATCTGCCAGAAGAATCTGACAAAAGTAAAACAAGTTCATCACGAGAAACTGAAAGTAAAGACTCTCTCAGAAGCTCCAGTGCTGCAGAGCAGCAGTCCTACAGTAATCCTGTTAGAGAAGAATATGATTCAAAGTCTGCAAAATTTTTTGAGATGAGCGAAGAGAAACGTGCCAAACTAAGAGAAATTGAGCTTAAAGTCATGAAGTTTCAAGATGAGCTTGAATCTGGAAAAAGACCCAAAAAATCTGGACAGAGTATTCAAGAGCAAGTAGAGCTTTACCGGGACAAGTTACTACAGCGGAGAAGGACAAAGATGAATCCACACCAGGCAGAAAAGAAAAAAAACGGAGGCACAGTCCCTCCCCCAGCCCCACCCGAAGTAGCAGCAGTAGGCGCGGCAGGTCGCCCTCACCACGATCAGAGCGCTCTGATAGATCCTATACAAAAGACAGCTCTCGATCGTCTTATAAAGACTCTCCGAGAGACAGTAACCGCAAGTCTTCTAAAAGGAGCTTCCTTTGATGTTCCAAATGTCCGAAAACAAAATAACTGCAGTGGTTGGGGCAATCTTCCTTCAACATAAAAACTATTGTCTTATTCTTTTTTTTTTTTTTTTTTTTTTTTCCTTCTTTTTTTTTGTCATTGTTTTTAGATCCCTTGAAACTGACTTAAATTAAAAGTGTAAGTTTCAGTTGTATAGATGTTTGCTTTTCAATAAA

Function

symbol description
u2surp Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA processing. Orthologous to human U2SURP (U2 snRNP associated SURP domain containing).

GO:

id name namespace
GO:0006396 RNA processing biological_process

KEGG:

id description
K12842 SR140; U2-associated protein SR140

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_08958415_08969605.mRNA True 2617 mRNA 0.44 22 8958279 8969605

Neighbor

gene id symbol gene type direction distance location
CI01000004_08953993_08957525 TMEM59 coding downstream 754 8953852 ~ 8957525 (-)
CI01000004_08941940_08945864 YIPF1 coding downstream 12415 8941918 ~ 8945864 (-)
CI01000004_08939621_08940367 NA coding downstream 17866 8939329 ~ 8940413 (-)
CI01000004_08931605_08938354 NDC1 coding downstream 19925 8930974 ~ 8938354 (-)
CI01000004_08896031_08915598 NA coding downstream 42617 8895575 ~ 8915662 (-)
CI01000004_09006723_09020870 NA coding upstream 37118 9006723 ~ 9020870 (-)
CI01000004_09159241_09169070 NA coding upstream 188870 9158475 ~ 9171717 (-)
CI01000004_09179343_09182737 NA coding upstream 208370 9177975 ~ 9183718 (-)
CI01000004_09324170_09327754 DSELA coding upstream 353941 9323546 ~ 9327754 (-)
CI01000004_09329111_09337596 NA coding upstream 359381 9328986 ~ 9337596 (-)
G29943 NA non-coding downstream 81080 8874697 ~ 8877199 (-)
G29955 NA non-coding downstream 84467 8872133 ~ 8873812 (-)
G29989 NA non-coding downstream 135802 8822269 ~ 8822477 (-)
G29986 NA non-coding downstream 142742 8813396 ~ 8815537 (-)
G29948 NA non-coding downstream 213873 8741906 ~ 8744406 (-)
G30009 NA non-coding upstream 9419 8979024 ~ 8980984 (-)
G30012 NA non-coding upstream 74820 9044425 ~ 9044678 (-)
G30013 NA non-coding upstream 80351 9049956 ~ 9050446 (-)
G30024 NA non-coding upstream 127116 9096721 ~ 9096984 (-)
G30041 NA non-coding upstream 187840 9157445 ~ 9157660 (-)
G29746 NA other downstream 600152 8354498 ~ 8358127 (-)
G29656 NA other downstream 992779 7964364 ~ 7965500 (-)
G29388 NA other downstream 2326372 6631293 ~ 6631907 (-)
CI01000004_06539836_06541252 NA other downstream 2412707 6538904 ~ 6541252 (-)
CI01000004_05617072_05627369 NA other downstream 3330765 5616644 ~ 5628289 (-)
G30316 NA other upstream 408332 9377937 ~ 9406921 (-)
G31203 NA other upstream 1776832 10746437 ~ 10750641 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other upstream 2437860 11406957 ~ 11412907 (-)
G32150 NA other upstream 2806914 11776519 ~ 11780951 (-)
G32207 NA other upstream 3406563 12376168 ~ 12384780 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00009050 u2surp coding CM030126.1 CM030126.1 22669884 ~ 22686612 (+)