CI01000004_08931605_08938354 (NDC1)


Basic Information

Item Value
gene id CI01000004_08931605_08938354
gene name NDC1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8930974 ~ 8938354 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_08931605_08938354.mRNA
GTTGTAATATGGAGGGCGATGTCGAGTATCGCATGGTCAGTGCTTCTCTTGCCCGTGACAACGGCAGTCTTTGTGCTCTTGAGTAGATTCAACCTGTTTCACCCCATCCAATGGATTTCAGAATGCACAAGTCTTCTTACGGCCTCAAGCACCATCTTTTCCCTTGTTGTGCTGTGTGGAGTGGTTCTGATGACTGGCTTTTTCAACCTGGAGTTCTACACTTTGGTTCCTTCCATTCCGTGTTCACGTGTGGCCCTTCTGGGGACAGTGCTCCACCCGCGACAGTGTGTTCATTCTTTGGTCTACTGCACCATGGGCATGCTGGTAATGTGGTGTGCTTCCGTTACCATCGGTGGACGTTACAGCACTCTAGGAACTCCCTGCAGGCAAAGGTATGTTCCTAAGACCTGGATCTCCAGCACACTTAATTTACAGATAGACAGTTCTCTCCAACCACTGGATTCATTGACTGGACTTCTAGACTTCTCCCTCCTGTACCACCTGGTGATCAGTGGCACTTTCCTGTACCTAACCTGGTACCTCACTGTGCTTCTCTTCAGGATTTATGTCACAGAGGCCTACAGTTTTCCAATGCAGTCCACATTTACTGAGGATGCAGAGCAGTGTCTGCCCAAAGTTTTGGCTGAGAAGAACACTTTAGTCATGAAGTTTTTGGCTCTGCAAGACCTGGCTTTGTTATCGCAACATTCTCTCTCACGTAGACTGGAAGTCTTCAGTCTGAGTCAGCCAGGTGGTCACCCTCATAACTGGAATGCCATCAGTAAGGAATGTCTGTCTTTGCTGAGTGAGCTGACGCACAGACTGGTGGCTCATCAGGATGCGGTTGCCTCTAATGGCCGAGTTAAATCTCAATCTGCCAGCAGTGACACCAGATCAGTCTCTTCAAGCAGCTCAGTGATGTCAGGAACAGAGGACATTCCTGAGACTCCTCGACTCAGTGTCCCGCTAAGGACCCCTGGTTCAGTCTTCAAGTCATCGGTGGGCGGTGTGCACAGCTCTCTGACGGCTCCTTTCACCTCAGATGCGGATAGCCCATTCTCTTCCCCTGCTATTCGACGTCTGGTTGGCCAACAGGAACCCCAGTCTCCCTGGTTTGGTACTGTACAGAGCCCCCACGTCATGAGGAGGGGCCCCAAACTTTGGAGTGCCTCCACAGAGTCACAAACCAATGGTAGTCCTCCGGCCTCCCCCGCCACTGTTTCTAGTCCTTCTGCAGCCAATCAGAAACCCAGCTTCCTGGCCCAGTGGCTGCAGAACAGAAGAGAGCAGGTTAAAAGCTTTTTGGCAAAGCGGGTGCTGATAGTGTATTTATTTAACAAGCTTCCAGAAGCCTCTAGCCAAGCTCTGTTTGCTGACAGCCAGGCTCATATCTGGGCTCTCCAAGGACTATCTCATCTGGTGGCATCCTCTTTCTCTGAGGATCAGTTTGGAGTGGTGCAGACTACATTACCTAGTATTCTTAGCTGCTTGGTAGTCTTGTTAGAGGCTGTTGACAGACACTTCAAACTGCCACATGCCTCCAGCAAACCTGCGAGGACTATCTGCAGTATGGGTGATTCCACCTACAAAACTCTAAGGTTTGCACTAAGGGCTGCGCTAAAGACAGCCATCTACAAGATAACTACCACTTTTGGAGAGCACTTGAATGCTGTAAATATTTCATCAGAACATAGAAAAAGGCTTCAACAGTTCTTGGAATTCAAGGAATAGTGCACCACACAACCTCTTCCTCTCAGATGTCTTTGGATAAGTGTGTGTGTGTCAGGAGAGAAAAGAGACAATGCGCTTGCTTGAAAAGTCTGATATATTGGTGATTAGCACTGTACATCACTCAAGGCCTTATAAAGTATATTGCTTTACAGCCAGGTGCTGCACTGTATTTCCCCTTGAAATCCCGGTCACTTTATAATTAACATTTACATCTTTCATACACAATTCTGTAATCTGGGAATTTTGTTTGTGTATTATGTACCTGTTTACTAGAATGTGATGAGTTTAAATCTGGTTGACTTCAAAATCATGGTGGGGATTGTCATCACTTTTCATCTTCAGTACATTTAAATTTTATCATACTCCCTTTAACAAAAATGAGGGGTCAACACTTTTTCGTTTTGAATCATTTATTGTTCACGTTCTATGTTTGTGATGTTTTAATAGCACTCTGGTTGGATGGTAAATTATCAAGGCCCCATCTGTGTTATGTGGATCATTATTTACAGGATCATCCATTTATTGATCTGGTTTCCATAAACATGTTTGGGGCATTTGACGAGAGCATCAATTGGGTTATTTGGTTAATGTCAAATATTACCTTTTTGAAACATTTATATAATTAAATAAA

Function

symbol description
ndc1 Predicted to enable protein-macromolecule adaptor activity. Predicted to be involved in nuclear pore organization. Predicted to act upstream of or within mRNA transport and protein transport. Predicted to be located in nuclear membrane. Predicted to be integral component of membrane. Predicted to be part of nuclear pore transmembrane ring. Orthologous to human NDC1 (NDC1 transmembrane nucleoporin).

GO:

id name namespace
GO:0017056 structural constituent of nuclear pore molecular_function

KEGG:

id description
K14315 NDC1, TMEM48; nucleoporin NDC1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_08931605_08938354.mRNA True 2362 mRNA 0.46 15 8930974 8938354

Neighbor

gene id symbol gene type direction distance location
CI01000004_08896031_08915598 NA coding downstream 15312 8895575 ~ 8915662 (-)
CI01000004_08887155_08890419 NA coding downstream 40555 8885759 ~ 8890419 (-)
CI01000004_08878465_08881325 BEST4 coding downstream 49489 8878465 ~ 8881485 (-)
CI01000004_08861514_08864815 MGC81873, ACADM coding downstream 66159 8861240 ~ 8864815 (-)
CI01000004_08857253_08860111 RABGGTB coding downstream 70863 8857253 ~ 8860111 (-)
CI01000004_08939621_08940367 NA coding upstream 975 8939329 ~ 8940413 (-)
CI01000004_08941940_08945864 YIPF1 coding upstream 3564 8941918 ~ 8945864 (-)
CI01000004_08953993_08957525 TMEM59 coding upstream 15498 8953852 ~ 8957525 (-)
CI01000004_08958415_08969605 U2SURP coding upstream 19925 8958279 ~ 8969605 (-)
CI01000004_09006723_09020870 NA coding upstream 68369 9006723 ~ 9020870 (-)
G29943 NA non-coding downstream 53775 8874697 ~ 8877199 (-)
G29955 NA non-coding downstream 57162 8872133 ~ 8873812 (-)
G29989 NA non-coding downstream 108497 8822269 ~ 8822477 (-)
G29986 NA non-coding downstream 115437 8813396 ~ 8815537 (-)
G29948 NA non-coding downstream 186568 8741906 ~ 8744406 (-)
G30009 NA non-coding upstream 40670 8979024 ~ 8980984 (-)
G30012 NA non-coding upstream 106071 9044425 ~ 9044678 (-)
G30013 NA non-coding upstream 111602 9049956 ~ 9050446 (-)
G30024 NA non-coding upstream 158367 9096721 ~ 9096984 (-)
G30041 NA non-coding upstream 219091 9157445 ~ 9157660 (-)
G29746 NA other downstream 572847 8354498 ~ 8358127 (-)
G29656 NA other downstream 965474 7964364 ~ 7965500 (-)
G29388 NA other downstream 2299067 6631293 ~ 6631907 (-)
CI01000004_06539836_06541252 NA other downstream 2385402 6538904 ~ 6541252 (-)
CI01000004_05617072_05627369 NA other downstream 3303460 5616644 ~ 5628289 (-)
G30316 NA other upstream 439583 9377937 ~ 9406921 (-)
G31203 NA other upstream 1808083 10746437 ~ 10750641 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other upstream 2469111 11406957 ~ 11412907 (-)
G32150 NA other upstream 2838165 11776519 ~ 11780951 (-)
G32207 NA other upstream 3437814 12376168 ~ 12384780 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location