CI01000004_08953993_08957525 (TMEM59)


Basic Information

Item Value
gene id CI01000004_08953993_08957525
gene name TMEM59
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8953852 ~ 8957525 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_08953993_08957525.mRNA
ATGAGTGCAATAAAGTCCTGCGGGATTTTGATGAGCTTTTGCTGCATACTAACTAGCACCTGTGCATCTTCCGAAGTCTTCGATGGTGTTTTGGGAAGCACGGCGTCTTGTCATAAAACATGTCAGATGACTTACAGTTTACACACTTATCCACGGGAGGAGGCGCTGTACGCCTGTCAGAGAGGATGTCGCCTCTTTTCCATCTGTCAGTTTGTGGGTGACAGCAAGGATCTCAACGAAACCAAATCTGAATGCGAGTCAGCCTGTCGTGAAGCCTACACCCAGTCAGATGAGCAGTACGCGTGCATTCTAGGATGTCAGAGTCAACAGCCATTTGCAGAACAGAGAATGGAGCAGTTGTTGACGATGATGCCCAGAATCCATCTCCTTTACCCGCTGACTTTGGTGAGGGGTTTCTGGGAAGACATGATGAACCAAGCCCACAGCTTCATCACATCGTCCTGGACATTTTATCTCCAGGCAGATGATGGAAAAGTAGTCATTTTCCAGTCTGAGCCGCAAGTTCAGTTCATCTCTCAGTTTGATTTCCAGAGAGACGAGTCCGAAGAGTCACAGAGCACTTTTGTAGATCAAGGAATGAAAAGTCCCATTTATAAAGACTACCCAAGGAGCTTCATTCAGGAGAGAGACAGAGATATGTTCATTGATAGAAGCAACTCTGAGGACGATTACAACCTCTTCAACTGTATCTCAAGGAACCCATGGTTGCCAAGCTGGATCCTGACCACCACTCTGGTTCTGTCTGTCTTTGTTCTGATCTGGATCTGTTGTGCCACAGTGTCCACTGCTGTTGAGCAGTATGTCCCTGCTGAGAAGATAAGCATAAATGGGGATATGGAGTACATGAAGGACAAGAAACTGACCCCTTACCTGCAGTCTTCTCTAGTGATCATCAGATCTCCTGGGGTGGAGGAGCAGGAAGCGGGACCCCTTCCATCAAAGGTCAATCTGGATCAGTCTAACATTTAATCAGTCTAACATCCAAAGGAATTGGGGTCTCATAGATATTTGGTTTTCTCTGTCAAAGTTGTGATTATTGCTTCAAACTCATTTACTATGGGTTTTTTGTTTCTTTTTCAAATTTGAAAGGTGTGGACTATGGGGAATATA

Function

symbol description
tmem59 Predicted to be involved in positive regulation of autophagy. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in late endosome and lysosome. Orthologous to human TMEM59 (transmembrane protein 59).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_08953993_08957525.mRNA True 1131 mRNA 0.45 8 8953852 8957525

Neighbor

gene id symbol gene type direction distance location
CI01000004_08941940_08945864 YIPF1 coding downstream 7988 8941918 ~ 8945864 (-)
CI01000004_08939621_08940367 NA coding downstream 13439 8939329 ~ 8940413 (-)
CI01000004_08931605_08938354 NDC1 coding downstream 15498 8930974 ~ 8938354 (-)
CI01000004_08896031_08915598 NA coding downstream 38190 8895575 ~ 8915662 (-)
CI01000004_08887155_08890419 NA coding downstream 63433 8885759 ~ 8890419 (-)
CI01000004_08958415_08969605 U2SURP coding upstream 754 8958279 ~ 8969605 (-)
CI01000004_09006723_09020870 NA coding upstream 49198 9006723 ~ 9020870 (-)
CI01000004_09159241_09169070 NA coding upstream 200950 9158475 ~ 9171717 (-)
CI01000004_09179343_09182737 NA coding upstream 220450 9177975 ~ 9183718 (-)
CI01000004_09324170_09327754 DSELA coding upstream 366021 9323546 ~ 9327754 (-)
G29943 NA non-coding downstream 76653 8874697 ~ 8877199 (-)
G29955 NA non-coding downstream 80040 8872133 ~ 8873812 (-)
G29989 NA non-coding downstream 131375 8822269 ~ 8822477 (-)
G29986 NA non-coding downstream 138315 8813396 ~ 8815537 (-)
G29948 NA non-coding downstream 209446 8741906 ~ 8744406 (-)
G30009 NA non-coding upstream 21499 8979024 ~ 8980984 (-)
G30012 NA non-coding upstream 86900 9044425 ~ 9044678 (-)
G30013 NA non-coding upstream 92431 9049956 ~ 9050446 (-)
G30024 NA non-coding upstream 139196 9096721 ~ 9096984 (-)
G30041 NA non-coding upstream 199920 9157445 ~ 9157660 (-)
G29746 NA other downstream 595725 8354498 ~ 8358127 (-)
G29656 NA other downstream 988352 7964364 ~ 7965500 (-)
G29388 NA other downstream 2321945 6631293 ~ 6631907 (-)
CI01000004_06539836_06541252 NA other downstream 2408280 6538904 ~ 6541252 (-)
CI01000004_05617072_05627369 NA other downstream 3326338 5616644 ~ 5628289 (-)
G30316 NA other upstream 420412 9377937 ~ 9406921 (-)
G31203 NA other upstream 1788912 10746437 ~ 10750641 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other upstream 2449940 11406957 ~ 11412907 (-)
G32150 NA other upstream 2818994 11776519 ~ 11780951 (-)
G32207 NA other upstream 3418643 12376168 ~ 12384780 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location