CI01000004_12198187_12210149 (SMARCD3A, SMARCD3B, SMARCD3)


Basic Information

Item Value
gene id CI01000004_12198187_12210149
gene name SMARCD3A, SMARCD3B, SMARCD3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12197912 ~ 12210149 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_12198187_12210149.mRNA
ATGGCAGACAAGATTCTCCCTCAGAGGTGCCAAGTCAAGAGTGATCGCACGGTACAGGTCACATGGGATGGAGAGAATGATGCAACACTGTGTAAATCAGGAGAGAGTCAAGTTACAATTTTGCTGTGTGTCACACAAGGACATACATCATATGTTTCAGTAACAAATGAGAATAAGAATGTTAAAACTGTCATTGACTTAGTGAAGTGGTGCAAACGCATGATCCGTGAACTGGTGCCAGAGTCCCAGGCGTACATGGACCTCCTGGCTTTTGAGCGCAAACTTGACCAAACCATTATGAGGAAGAGGGTGGATATACAGGAAGCCCTCAAAAGACCAATGAAGCAAAAGCGGAAGCTACGCTTGTACATTTCAAACACTTTCAACCCTGCCAAACCTGACGCAGAGGACTCGGAGGGCAGCATTGCATCATGGGAGCTGCGTGTAGAGGGCAAGTTATTGGATGATCCTGGAAAACAAAAGAGGAAGTTTTCGTCTTTCTTTAAAAGCCTTGTTATTGAGCTGGACAAGGATCTGTACGGCCCTGATAACCACTTAGTGGAGTGGCACCGCACCCCTACAACCCAAGAGACAGACGGCTTCCAGGTGAAGAGGCCCGGCGATGTGAATGTGCGCTGTACCCTCTTGCTCATGCTGGATTACCAGCCTCCTCAGTTTAAGCTGGATCCTCGCCTCGCACGTCTCCTTGGCATCCACACTCAAACCCGCTCCTGCATCATCCAGGCATTATGGCAGTACGTCAAGACCAACAAGATGCAGGATTCTCATGAAAAGGAGTACATCAACTGTGATAAATATTTCCAGCAGGCACTGACATACTTCTGTCATATAAAATACTCTCTTCATTTTAGTGTTAACATTTTGCCTGATAGCATACCTGATATTGTGGATCCAAATGACCAGAAGAAGACAGCCTGCTATGACATTGATGTTGAAGTTGATGATCCTCTTAAGAGTCAGATGAATGGATTCCTGCTGTCCACAGCCAATCAACAAGAGATTGCATCCCTAGACAACAAGATCCATGAAACTATCGAGTCCATCAACCAACTTAAGATTCAAAGAGATTTCATGCTCAGCTTTTCCAGAGACCCCAAGGGCTACATCCAGGACTGGATCTGCTCCCAGAACCGGGATCTTAAGCTGATGACAGATACAGTTGGAAATCCAGAAGAAGAGAGGAGAGCAGAGTTTTATAACCAGCCCTGGTCTCAGGAAGCTGTCAGTCGCTATTTCTATTGCAAGCATGATTCAGAAATGTTTTTGATCTTTGTTGCCTTATTAAATCAACGAGATGCACAGGAAGCATTAACCAAAGCCGGGAAACATGATAACGAGGGAGTGATTTCAACAAGAAAAGTGCTATCAGAGAGCAGCTTTGCTGCTACGCAAAGAAGTGGGTGGAGAGTTATTACGTATCGGCATCTGATTGGCTGCAGTGCCGGTATTGGTGACACGCGCCTTACACCGCTTTGTAGCGCGAGCCATGAGATCGCTTCTCCGGTGCTAGTAGCGCTTCGTCAGGAAGAGATCTAGGTAAGACAACGGCCTAATTCCACAAAAGTTCATTATTTACTCATAATATTTATATATCTCTGAGATGATCGATGTCTACAAAAAAAATTCATACCTCATTTACTAATTTAGTTTTGTTCGCCGGACATCTTTCGGATTAACGGGCTAGATTTACCGGCTGTTAGCTTGGCGGCTAGCTCGTGGAAACAGATTCGCGTGCGCCCCTCAACTAGTTTAACACGGTTAATTGTTTGATACTACTTTTACTTATGTTATCGATTTTTTTTTTAAATAAA

Function

symbol description
smarcd3b Predicted to enable transcription coregulator activity. Acts upstream of or within cardiac muscle cell differentiation; determination of left/right symmetry; and heart morphogenesis. Predicted to be part of SWI/SNF complex. Predicted to be active in nucleus. Is expressed in several structures, including brain; immature eye; margin; notochord; and tail bud. Orthologous to human SMARCD3 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3).
smarcd3a Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of SWI/SNF complex. Predicted to be active in nucleus. Orthologous to human SMARCD3 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3).
smarcd3 Enables nuclear receptor binding activity; nuclear receptor coactivator activity; and signaling receptor binding activity. Involved in several processes, including chromatin organization; positive regulation of neuroblast proliferation; and regulation of transcription, DNA-templated. Located in chromatin; cytoplasm; and nucleoplasm. Part of SWI/SNF complex and npBAF complex.

GO:

id name namespace
GO:0003007 heart morphogenesis biological_process

KEGG:

id description
K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_12198187_12210149.mRNA True 1832 mRNA 0.45 13 12197912 12210149

Neighbor

gene id symbol gene type direction distance location
CI01000004_12191329_12197377 ABCF2B, ABCF2 coding downstream 535 12190634 ~ 12197377 (-)
CI01000004_12181888_12188055 NA coding downstream 9857 12181579 ~ 12188055 (-)
CI01000004_12170772_12177138 TTC19 coding downstream 20774 12170517 ~ 12177138 (-)
CI01000004_12127993_12144790 SLC4A2A, SLC4A2 coding downstream 53122 12126600 ~ 12144790 (-)
CI01000004_12111607_12123001 UBTFL, UBF1 coding downstream 74594 12110892 ~ 12123318 (-)
CI01000004_12228586_12231682 NA coding upstream 18368 12228517 ~ 12232062 (-)
CI01000004_12239182_12271760 FASTK coding upstream 28066 12238215 ~ 12272219 (-)
CI01000004_12279303_12308271 PUF60, PUF60A coding upstream 68745 12278894 ~ 12308271 (-)
CI01000004_12315924_12323953 NRBP2, NRBP2A coding upstream 104596 12314745 ~ 12323953 (-)
CI01000004_12345221_12345884 NA coding upstream 134661 12344810 ~ 12346309 (-)
G32258 NA non-coding downstream 784 12196373 ~ 12197128 (-)
G32177 NA non-coding downstream 18088 12177943 ~ 12179824 (-)
G32256 NA non-coding downstream 31168 12166528 ~ 12166744 (-)
G32240 NA non-coding downstream 206093 11991608 ~ 11991819 (-)
G32239 NA non-coding downstream 210085 11987529 ~ 11987827 (-)
G32200 NA non-coding upstream 72501 12282650 ~ 12286780 (-)
G32261 NA non-coding upstream 141870 12352019 ~ 12352451 (-)
G32264 NA non-coding upstream 209283 12419432 ~ 12419839 (-)
G32266 NA non-coding upstream 213440 12423589 ~ 12423850 (-)
G32150 NA other downstream 416961 11776519 ~ 11780951 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other downstream 785005 11406957 ~ 11412907 (-)
G31203 NA other downstream 1447271 10746437 ~ 10750641 (-)
G30316 NA other downstream 2790991 9377937 ~ 9406921 (-)
G29746 NA other downstream 3839785 8354498 ~ 8358127 (-)
G32207 NA other upstream 166019 12376168 ~ 12384780 (-)
CI01000004_14543631_14551256 NA other upstream 2340651 14541515 ~ 14551352 (-)
G33746 NA other upstream 2358644 14568793 ~ 14569264 (-)
G33750 NA other upstream 2368309 14578458 ~ 14579001 (-)
G33755 NA other upstream 2371257 14581406 ~ 14581873 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location