CI01000004_12170772_12177138 (TTC19)


Basic Information

Item Value
gene id CI01000004_12170772_12177138
gene name TTC19
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12170517 ~ 12177138 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_12170772_12177138.mRNA
TCGAGCCGCTGGCACAGAAGGTCATGGCATCTGGGCGTCAGTTCTCAAAGCACCGGTGAGAAGCGTCACTCGGACACGGCGGGGTTCAGCAGGTGGACTCTTGCGTGGGGTGTGATGGCCTTTTCTCTTTTTGGAAGCTCTGATGAGAGGACTGAGGAACAAAAACTTGAGGATGAACTTATTCTGCTCTTGAAGAAAGCCAAGTACAGCATGATGACTGGGGAACTGGACGCAGCCAATGTCCTCTTACACAAAGCTGTCAGACTGGCACATCAGATGCACAATAATGATGCCATTATATATACATACAGCCTGATGGCGAATCTTGCCTTTGTCCAAGGTCAGCTGGATAATGCTGAGAAGCTGTTTAAAGCAGCCATGAGCTTCATGCTGTCAGGAGGAACACCACAGGATGACAATGCAGTGATTGAGATGTCACTGAAGCTGGCCAGCATATATGCCACTCAAAACAAGAACGAGTTGGCGGAGCATGGCTTCCAGTTCTGCACAGAGTCTTTAGAGGCCAAGATTGAGAAACAGAAGGACCTTCCTCCAGAAAGCCTGTCAGACGAGGAGCGCAAAGACACCAGGCTGCTGCTCGGTCTTAGTCTGGATGCGAGGGCACGTTATTTGGCAGCTAATCATCGTTTCACAGGGGCTTGCAAGGATTACCGGCACGCGCTGCAGATCTGCCAGGAGGAGCAGGGAGAATCCCATCCACAGACCCTGGTTCTTTTGAGTGATCTGGCGACCGTTTTGGACCTGCAGGGGAAGCATGATGAGGCATTGACTTATGTGAAGAAGGCCGTTGAGCTTGGACAGGCAGCGGGTCACCCTGATCAACATGTGCTGCTTGGGAATATGGCAGGAATTCTGATGCACAAAGGGGAGTTTGAGGAGTCTGGTAAGCTGTATAAGGAAGCCCTGGCTCTGGCACATGCAGCAGGAGATGGAGAGGCTGTTGAGCAGCTTCAGGAGGGGCTGAAAGAGCTGGCCAACAGGAGAGACGGGCAAACGGAGAGCAAAGCTGATGAACAGGAGCCTAAGGAATGATCCAAACAAAACACTCCTGGAAGTATAATATACTTCATATATATATATAATATATNNNNNNNNNNATATATATATATATATATATATATATATATGTATATGTGTTGTATATATACATATACAACATTAGGACAAATTTATCAGTTTTGTGCAACTTATAATTCAACAGTACACAACATACATTGTCTAATGCCCTTTTTATACCTAACCTCCCATTAGACTTATTTTGTAGTCTTGCTCTTGGACTGTAATAAA

Function

symbol description
ttc19 Predicted to be involved in mitochondrial respiratory chain complex III assembly. Predicted to act upstream of or within cell division. Predicted to be located in mitochondrion and respirasome. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in mitochondrial complex III deficiency nuclear type 2. Orthologous to human TTC19 (tetratricopeptide repeat domain 19).

GO:

id name namespace
GO:0005743 mitochondrial inner membrane cellular_component

KEGG:

id description
K18169 TTC19; tetratricopeptide repeat protein 19, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_12170772_12177138.mRNA True 1308 mRNA 0.46 10 12170517 12177138

Neighbor

gene id symbol gene type direction distance location
CI01000004_12127993_12144790 SLC4A2A, SLC4A2 coding downstream 25727 12126600 ~ 12144790 (-)
CI01000004_12111607_12123001 UBTFL, UBF1 coding downstream 47199 12110892 ~ 12123318 (-)
CI01000004_12048597_12107143 ASAP1, ASAP1A coding downstream 62316 12047319 ~ 12108201 (-)
CI01000004_12025107_12032154 NA coding downstream 137565 12025107 ~ 12032952 (-)
CI01000004_11974708_11980518 NA coding downstream 188222 11974644 ~ 11982295 (-)
CI01000004_12181888_12188055 NA coding upstream 4441 12181579 ~ 12188055 (-)
CI01000004_12191329_12197377 ABCF2B, ABCF2 coding upstream 13496 12190634 ~ 12197377 (-)
CI01000004_12198187_12210149 SMARCD3A, SMARCD3B, SMARCD3 coding upstream 20774 12197912 ~ 12210149 (-)
CI01000004_12228586_12231682 NA coding upstream 51379 12228517 ~ 12232062 (-)
CI01000004_12239182_12271760 FASTK coding upstream 61077 12238215 ~ 12272219 (-)
G32256 NA non-coding downstream 3773 12166528 ~ 12166744 (-)
G32240 NA non-coding downstream 178698 11991608 ~ 11991819 (-)
G32239 NA non-coding downstream 182690 11987529 ~ 11987827 (-)
G32238 NA non-coding downstream 184707 11985549 ~ 11985810 (-)
G32237 NA non-coding downstream 185089 11985217 ~ 11985428 (-)
G32177 NA non-coding upstream 805 12177943 ~ 12179824 (-)
G32258 NA non-coding upstream 19235 12196373 ~ 12197128 (-)
CI01000004_12279303_12308271 PUF60, PUF60A non-coding upstream 90749 12278894 ~ 12308271 (-)
G32200 NA non-coding upstream 105512 12282650 ~ 12286780 (-)
G32261 NA non-coding upstream 174881 12352019 ~ 12352451 (-)
G32150 NA other downstream 389566 11776519 ~ 11780951 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other downstream 757610 11406957 ~ 11412907 (-)
G31203 NA other downstream 1419876 10746437 ~ 10750641 (-)
G30316 NA other downstream 2763596 9377937 ~ 9406921 (-)
G29746 NA other downstream 3812390 8354498 ~ 8358127 (-)
G32207 NA other upstream 199030 12376168 ~ 12384780 (-)
CI01000004_14543631_14551256 NA other upstream 2373662 14541515 ~ 14551352 (-)
G33746 NA other upstream 2391655 14568793 ~ 14569264 (-)
G33750 NA other upstream 2401320 14578458 ~ 14579001 (-)
G33755 NA other upstream 2404268 14581406 ~ 14581873 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location