CI01000004_12127993_12144790 (SLC4A2A, SLC4A2)


Basic Information

Item Value
gene id CI01000004_12127993_12144790
gene name SLC4A2A, SLC4A2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12126600 ~ 12144790 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_12127993_12144790.mRNA
CGATGTGATGACGATGACGATGACGAAGGGGACTTGAACAAGGCACTGGGAGTGCAGCGCTTCCAGCAGATCCTCACGCCCGCCCAGCGCGTGCCCATCGAACAGCACCGCACATTTAATGAGGAGGACTTTGAGTGTGAGAGCTTGACTCCTGATGCGTCTGATCACCGCCACACCTCTCTACACATTCACCACCCTCTGTCAAAACTCCCAGAGGGCCGGAGGAAAAAGACCGGGAGGAAGCGGAAGGACTCAGGACGGAGGAGGAGTTCATCCATGGGAGCAGCTCCCCCGATAGATGAGGATGATGAGGATGAAGAGGTGGATGAAGATTCCTGCAGTCAGCAAGACAGAGAGGGCAATGTCACCACCACACCTACACCGGACACGGACACAGAGGCGTACACCGAGCAGGCAGAGTTTTTTGTATCAGAAGATGACCCCAACTCCACTGTAAAAAAGAACGGTAAAGCTTCACCTCATCGAAAAGTGTCAATCATACCCCATTCAACACTTCACACCAGTATCAGCATCCCAGAAGATGTTACAACAACCGTGGGCAGAAATTGGGTTCGTAATCTGCCCAATGGGAGACGAGTGTCCGCACCATGTTTGTTTCCAAGTTTGAGTTCGCCAGACGGCAACTCTAAGCCTGGCCGCAGCTATGATCTGCACGAGCGGCGCCGCACAGGCAACATGACGGGCACTGCGCTCGCACACTACCAACACATGCCCACTGATGAGAGCGAGGCACAGACGCTCGCCACGGTTGACCTGGATGGCATTAAGAGTCACCGGTTTGAAGATGTCCCTGGTGTGCGGCGGCACCTGGTTAAGAAGAGCGCAAAAGGTCAGGTGGTCCACATTGGCAAGGACCACAAAGAACCCAGCAGTCGTATCCGCACTAAGCTGGATCGGACCCCACATGAGAGGAGATCATGGCCCTACTACACGGACCACAGGGTTCGTCATGCCCAACAGCTGAAGGTGTTTGTTGAGCTGAACGAGTTAGTGATGGATAAGAACCAGGAGATGCAGTGGAGGGAAACAGCTCGTTGGATCAAGTTTGAGGAGGATGTGGAGGAGGAGACCGAACGCTGGGGGAAACCTCATGTAGCTTCTCTCTCATTCCGCAGCCTGCTGGAGCTCCGTAAGACCATTTCACATGGTGCAGTGTTGTTGGACCTGGACCAGAAGACCCTTCCTGGTATTGCTCATCAGGTTGTGGAACAGATGATCATCTCAGATCAGATCAGAGCACAGGACAGAGCCAACGTGCTCCGAGCCCTTCTGCTCAAACACAGTCATCCGAGTGATGGCAAGGAGCACAGCTTGTTTAAACGGAACATCTCTGCAACCAGCCTTGGCTCTCTCATATCTCATTACCATAGCAATAACCATATCGCAGCACCTGAGCCCCCTGCCACAGACCCGCTCATGGCAGGACTACGTAATTTTGAATCACGCAGCAGTGTAGACTTAGATAAGAATGAGAAAGACACACCTCAGTTTTTTGGTCTGCACAAGACCAAATCTAAACATGAGCTAAAGTTGCTTGAGAAGATTCCCGAGGATGCAGAAGCGACCGTTGTCCTTGTGGGTAGCGTGGATTTCCTGGACCAGCCCACCATGGCCTTTGTGAGACTGCAGGAAGCAGTTCTGTTAGAGTCAGTTCTAGAAGTACCGATTCCAGTACGGTTCATTTTCGTGCTCCTTGGCCCACCCAGTGCCAATGTTGACTACCACCAAATCGGCCGCTCCATATCAACACTTATGTCGGATAAAGTCGGAGGAGATGAGTTGCTGCATTCTATCGCCCGCTTCCAGAAAGAGATGCTGCACAAGAGACATGAGCAAGAGGTCAAACTACAGGCCAAGGAACTTAAGAGCCCCGAGGACATGGACGACGATCCTCTTCAGAGAACGGGTCGGCTGTTTGGCGGGGTTATCCGAGATGCACGACGCCGCTACCCTAAATACATCAGCGATTTTAAGGATGCCCTAAGTCCTCAATGCATGGCCACAGTCATATTTATTTACTTTGCTGCCCTTTCTCCTGCCATCACCTTTGGCGGACTATTGGGTGAAAAGACAGATGGTTTGATAGGTGTGTCAGAGCTGATTATTTCCACTGCCGTGCAGGGAATGTTGTTCTGCCTGGTTGGGGCTCAACCTCTTCTAGTGTTCTGCAAGTCCAGTGAAATCGAGTTTCTGACAGGACGTGCGTGGATTGGAATTTGGTTGGTCATCATTGTAGTTCTCACGGTGGCCTTTGAAGGGAGCTTCCTGGTGCGATTTGTGACACGCTTCACCCAAGAGATCTTCTCCATCCTTATCTCTCTCATCTTCATCTACGAGACCTTCTTCAAGCTGGGCAAACCAAACACCGCTCTCCTCTCCCTGGTGCTCACGTCAGGCACCTTCTTCATTGCCTTCTATCTGCGTAAATTCAAGAACAGCGCTTTTTTCCCTGGCAGGCTCCGAAGGGCTATTGGAGATTTTGGAGTTCCTATTGCAATCTCCACCATGGTCCTGTTGGACTACAGCATTAAGGACACTTACACACAGAAACTAAGTGTTCCTGATGGCTTCTCTGTGACCAGCCCGGACAAGCGCGGTTGGTTCATACACCCAATGGGCTCTGACGGCCAGTTCCCCATTTGGATGATGGTTGCCAGCATTCTACCAGCTCTGCTTGTCTACATCCTCATTTTCATGGAGACTCAGATCACCACTCTTATTGTGAGTAAGAAGGACAGGATGCTGGTTAAGGGCTCAGGGTTTCACCTGGACCTGCTAATCATTGTGGCCGCGGGTGGGATTTCAGCACTGTTTGGGCTGCCATGGTTGACTGGTGCGACTGTTCGTTCTGTAACTCATGCAAATAGTCTTACGGTGATGAGCAAAGCCGTCGCTCCTGGCGACAAACCTCGCATTCAGGAAGTAAAAGAGCAGAGAGTAACAGGATTTCTGGTGGCTTTTCTTGTAGGTCTCTCCATTGTGATTGGAGATCTTTTGCGGCAGGTTCCTATCGCTGTGTTGTTTGGTATATTCCTCTACATGGGAGTGATGTCTCTCAATGGGATCCAGCTAACAGAACGCATGATGCTGCTCTTCATGCCACCGAAGTACCACCCTGACCACACCTATGTCCGCAAGGTTCGTCACAAGAGATTTCAGTATTCACCATTCTTAAATCAATATTCTGATGACAGTGCGTACTCTCCGCATGCACCTGTTCACTTGTTTGCAGCTGGTGTGCCTGGCTGTGCTGTGGATTGTAATGTCAACCGCGGCCTCGTTAGCCTTCCCGTTTGTCCTTCTCCTCACTGTGCCATTCAGGAGGTTCCTGTTGTCCCGAATATTTACTCACCCTTGACGCAGATGATGCAGAGCCGTCGTTTGATGACAGAGAAGGTCAAGATGAATATACAGAGATGCAAATGCCAGTATGACCTCATTCCTCTTCTGTCACTACCTGGGCTGGCCTGACTTTCTTTTCAGGCAGAGATGTCCAAATGTACTGCCTGTCTTTAACATTTATCAATGTTTGTTCCATTTTGTTTTTGCTTAATTCATGGAGTCGTTATATTTATACATATGTAAAAGTGTTAAATATTTGCTCAATGTCACTTGTATCTGTTGCGTAAAGAAATCTCTGTCTCCTGTACTATTAATATTTTATCTGTTTATTTATCAGAGTTGAAATGTTATTGTGCTATGTATGTGTTGTGGAGGGTTAAATGAATTCATGATCTCCAGTCAACTCAAAATGATACCGGAAGCACTTTAAGGCAAATTGAAGCCTTTTCTACTGCTTCGTTACATTTCATTGCAAGATGACATATAGTGTACTCCTGATAATGAACAACTGTACATAATAACATTAATGCACACACAATATTTTTGTAGCTAAACAGAAATATGTATCTACAAGCATTGGCACTTGTGACAAAACCAGTTTATTTGGATAGAAGAAGAGATATACGTGAATAACTGTGAATATGTTGTCTTTTGAAAAGAGAAAAGGTTGCATAGCTATTTTGAAACCAGTTTTCTCACCAGAGCACCAAAGAGGGCTGTGTGTTTATATCACATGAACACTAAGGGAATCATATAAGTAGTCTTTAATAGTCACAATAGCACATAAGGCTACAAAAAGAGTCATTTGATTATAGTGGATTTTAATTGCCCAGTTTGTATGAAAGAGAGAAAAGCCATGGTCATTGTTAAAAGGAGTGTTTTATGGAGTTTGAAAGGTTACGTTTTGCACCATCTCTGCTATGATGAATAATGTTGTTATGATTATAAATCACCAACTACACTTGTGAAATGGTTTGATCGTTTGCTGCACTACTGTTTTAGTTTTATTAACAAGTTTCATAGGTGAATATTTGTCATTTGAGGTACAGATTTAGAATGTAAACGAGCAAAGGCAAGTGTAGTAGATTTGGTATAATGCTGTAATCCTTTTCTTAACTGTGTACATTCCAGTGATGATCTTGCGAATAATTAATTTTATAAAGAAGGGACTACATCTAAGATGTTGTTTAGTCTGTTGTGTATGGTTTAAAAAAAATGTCAATGTGTATTTTCTGCTACTAAAACAGTTCATTCTACAGTTTTCATAACTAGCGTGCACACTGTAGTAGTGCCTTTTTTTCCACTTGATTCTTAATTTCAGATACAATGTTGCTTTTACAAAGCTGAAGAAGTGACCTTAGCAAGAAAACAAAACACTGCAAGTGTGATAGAGAAAGATGTGTTCAATAACAGATTTTTGTGATTATTAATTAATATATTACTGTAGAATGTCAATGATTTGGGCATATCTTTTGGTTTTAGCTCTGTAAATACTTAAGAGCACAGGCCCAAACATAATAAA

Function

symbol description
slc4a2a Enables anion:anion antiporter activity. Acts upstream of or within anion transport. Located in apical plasma membrane and basolateral plasma membrane. Is expressed in several structures, including cardiovascular system; immature eye; midbrain neural rod; optic tectum; and pronephric duct. Orthologous to human SLC4A2 (solute carrier family 4 member 2).
slc4a2 Predicted to enable anion:anion antiporter activity and chloride transmembrane transporter activity. Predicted to be involved in several processes, including amelogenesis; anion transport; and positive regulation of enamel mineralization. Located in focal adhesion and membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K13855 SLC4A2, AE2; solute carrier family 4 (anion exchanger), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_12127993_12144790.mRNA True 4885 mRNA 0.46 22 12126600 12144790

Neighbor

gene id symbol gene type direction distance location
CI01000004_12111607_12123001 UBTFL, UBF1 coding downstream 3282 12110892 ~ 12123318 (-)
CI01000004_12048597_12107143 ASAP1, ASAP1A coding downstream 18399 12047319 ~ 12108201 (-)
CI01000004_12025107_12032154 NA coding downstream 93648 12025107 ~ 12032952 (-)
CI01000004_11974708_11980518 NA coding downstream 144305 11974644 ~ 11982295 (-)
CI01000004_11944095_11946749 NA coding downstream 179584 11943785 ~ 11947016 (-)
CI01000004_12170772_12177138 TTC19 coding upstream 25727 12170517 ~ 12177138 (-)
CI01000004_12181888_12188055 NA coding upstream 36789 12181579 ~ 12188055 (-)
CI01000004_12191329_12197377 ABCF2B, ABCF2 coding upstream 45844 12190634 ~ 12197377 (-)
CI01000004_12198187_12210149 SMARCD3A, SMARCD3B, SMARCD3 coding upstream 53122 12197912 ~ 12210149 (-)
CI01000004_12228586_12231682 NA coding upstream 83727 12228517 ~ 12232062 (-)
G32240 NA non-coding downstream 134781 11991608 ~ 11991819 (-)
G32239 NA non-coding downstream 138773 11987529 ~ 11987827 (-)
G32238 NA non-coding downstream 140790 11985549 ~ 11985810 (-)
G32237 NA non-coding downstream 141172 11985217 ~ 11985428 (-)
G32231 NA non-coding downstream 165222 11961179 ~ 11961378 (-)
G32256 NA non-coding upstream 21738 12166528 ~ 12166744 (-)
G32177 NA non-coding upstream 33153 12177943 ~ 12179824 (-)
G32258 NA non-coding upstream 51583 12196373 ~ 12197128 (-)
CI01000004_12279303_12308271 PUF60, PUF60A non-coding upstream 123097 12278894 ~ 12308271 (-)
G32200 NA non-coding upstream 137860 12282650 ~ 12286780 (-)
G32150 NA other downstream 345649 11776519 ~ 11780951 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other downstream 713693 11406957 ~ 11412907 (-)
G31203 NA other downstream 1375959 10746437 ~ 10750641 (-)
G30316 NA other downstream 2719679 9377937 ~ 9406921 (-)
G29746 NA other downstream 3768473 8354498 ~ 8358127 (-)
G32207 NA other upstream 231378 12376168 ~ 12384780 (-)
CI01000004_14543631_14551256 NA other upstream 2406010 14541515 ~ 14551352 (-)
G33746 NA other upstream 2424003 14568793 ~ 14569264 (-)
G33750 NA other upstream 2433668 14578458 ~ 14579001 (-)
G33755 NA other upstream 2436616 14581406 ~ 14581873 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location