srpk3 (srpk3,LOC107743111,LOC107727421,LOC107601770,LOC107584918,LOC107674354)


Basic Information

Item Value
gene id srpk3
gene name srpk3,LOC107743111,LOC107727421,LOC107601770,LOC107584918,LOC107674354
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 4164539 ~ 4182039 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043245985.1
TGTCAATACGGAGCCGTCTGACTGCGCATGCGCAGAACCAACCGAAGCGAATGTGCGTGAGGTGACAGCTGTCCCGATGATATCGATGAACGTATCCAGCAGCGACAACAGCCTTCCCCAGAACAGCCACGGCaaaaagcagaagaagaaaaacaagaagcacCGCAAAGCAGCGGCGGCAGCGGTGGAGATCTCCAGTTTGGAGCTGGGACCCCAGATCCCCTCCTCAGATGAACTGTGTCACATCCTCACCATCCACAGATCCTCCACCCCTCCAGAGTCGCCCCCGACGCCCCCGTTATACCTTTCCCAGAGTCCCCCAGACCTGCAGCCTCCGGCCCCCATCCCTCACTCCGTTCCCGTCACAGTGGTTCCCTCACCCAGCGTCTCGTCTCCAGACACACCTTCCACTCCCGTAGCACCTTCACTGGACCTACCTTCGGGTCTCTCCACGACTCCTCCCACTCCACAGGCCCCGGCCAATCAGACGACCCCTCCACAAGCTCTGAGCCCTCCCCCGCCAGATTTTTCCCCACCTCCAGCAGAATTACTTGGGTCAGATGATGAGGAACAAGAGAATCCGTCAGATTACTGTAAAGGAGGGTATTATCCAGTGAAGATTGGAGACCTGTTTAATGGCAGATATCATGTGGTCAGGAAACTGGGATGGGGTCATTTCTCCACCGTATGGCTGTGCTGGGATCTACAGCGGAAACGGTTTGTGGCACTGAAAGTGGTTAAAAGTGCCCAGCACTACACTGAGACTGCACTGGACGAGATTAAATTACTGAGATGCGTTCGAGACAGCGACCCCACAGACCCCAAACGAGAGAGAATAGTTCAGCTCATTGATGACTTTAAAATCTCTGGAGTCAATGGTGTTCACGTGTGTATGGTACTAGAGGTGCTCGGTCACCAGCTGTTGAAATGGATCATCAAATCCAACTACATGGGTTTGCCTATGGTCTGTGTGAAGAGCATTCTTCGACAGGTTCTCGAAGGCTTGGATTACTTGCACACGAAATGCAAGATCATCCACACAGACATAAAGCCGGAGAATATCCTGCTGGATGTGAATGAGGTGTATGTGAGACGGCTGGCTGCAGAGGCCACGTTATGGCAGAAGGCCGGAGCTCCGCCCCCTTCAGGCTCCTCCGTTAGCACGGCCCCAAGGGAAAAACAGATGGGTAAATTATCAaagaataagaagaagaagttgaAGAGGAAAGCCAAACGGCAGCAGCGTCTGTTGGACGAGAGGATGTTGGACCTGCAGAGGATGGAGGAGTTGGATGGAGTTTTGCCGCCGGACGCTTCTGGAAACACGCGAGCGCTCTGGAGGCTGAGCGAGGACGGAGAGGGTGACGACAAACACGCACAGATGAACGGTAACGGACACTCCATAGGAGCTCTGAATAAACACAGTCCGGAATCAGGCTCGTCGTGGTTGGAGGAGGGCTGTAACGGCTTCGGACCCCTGCGCTTCTCCAGCCCTGGATCAGGCCTGTCCGGCATGTCTGGCTCCATCCTGTCAGCTACCTCTGAGTCGGCTCTGTCCACTCTGTCCGGATACTCCACGGAGCGCTCCCTGCTCTCTCCTAACACGTACTCCGCTGCTGATTTCTTAGTGAATCCTCTAGAACCTCAGAACGCAGATAAAATACGCATCAAGATTGCAGACCTAGGCAATGCATGCTGGGTGCACAAGCACTTTACCGAGGACATCCAGACGCGCCAGTACCGAGCTCTGGAGGTGCTGATCGGAGCCGAGTACGGGCCCCCGGCCGATATATGGAGCACGGCGTGTATGGCGTTCGAGTTGGCGACTGGAGACTATCTGTTTGAGCCTCACTCAGGAGAAGACTACACTCGAGATGAAGatCACATAGCTCACATCATTGAGCTGCTGGGTCCCGTTCCTCCACACTTCGCCTTGTCAGGAAGATACTCCAGAGAATACTTCAACCGAAGAGGTGAACTGAGGCACATCTCCAACCTGAAGCCGTGGGGGCTGTTCGAGGTGTTACTAGAAAAATACGAATGGCCTCTGGATCAAGCAGCCCAGTTCAGCGACTTCCTGCTCACCATGCTTGAGTTCCTCCCGGAGAACCGCGCCACAGCCGCCGAGTGTCTACAGCACCCCTGGATCAACTCCTAACGCACCACTTTCCTTGTGTTCACTGCATTTGTGCGGTCTGCGTTATTTAGGTCCGTCTGATCACTCGGTGCACACACATCCACCTTTCAGAGCATAAACTCATACTGGAGATACAGTATCTGAGCACAGACCTAGCTAGAACCTCAAAcctatgttgtttttttatatatatatatatatgtatatgtatatatatatttaaagaagcTTTGATCTCTGAACATGATGGAGAGAATATGTCTGTAGTCTGTCGAGTTTTCATTGTATGGTCATTTAATTGTCTAGAAGGGTcacatatttatatgttaaaatagtGCCTTGACATGCCatctgcaaaaatataaaaatacaaaaaaaaaaagcccctcacctttttatatttgtctGCGAATCTGTGTGAGGAATGCTTGTTTGTGAACATACAGAGAACTGTATGAATACTTGACTGAATTCATTAAAGACTTGAGCTCTTAAACCCTGCGTACGGAAGAATAAAGGATCACTTACAAACACA

Function

symbol description
srpk3 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction; regulation of mRNA processing; and spliceosomal complex assembly. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human SRPK3 (SRSF protein kinase 3).

NR:

description
SRSF protein kinase 3-like

GO: NA

KEGG:

id description
K15409 SRPK1; serine/threonine-protein kinase SRPK1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043245985.1 True 2672 mRNA 0.51 16 4164539 4182039

Neighbor

gene id symbol gene type direction distance location
plxnb3 plxnb3,LOC107701812,LOC107743121,LOC107727420,LOC107674349,LOC107584917,LOC107601751 coding upstream 1976 4093252 ~ 4162563 (+)
abcd1 abcd1,LOC107701814,LOC107743108,LOC107552221,LOC107727428,LOC107674359,LOC108265308 coding upstream 73510 4075018 ~ 4091029 (+)
mbd1a LOC107743107,LOC107701816,LOC107552163,LOC107584915,LOC107727404 coding upstream 136837 4013914 ~ 4027702 (+)
cxxc1a cxxc1a,LOC107701818,LOC107743112,LOC107727409,LOC107674299,LOC107577056 coding upstream 151716 4007588 ~ 4012823 (+)
tfe3a tfe3a,LOC107584878,LOC107727418,LOC107743115,LOC107701807,LOC107674333 coding upstream 169663 3979779 ~ 3994876 (+)
comta LOC107601759,LOC107584930,LOC107674306,LOC107653432,LOC107743139,LOC107727411 coding downstream 36379 4218418 ~ 4226247 (+)
grm6a grm6a,LOC107601768,LOC107653428,LOC107743101,LOC107674373,LOC108439669,LOC106566502 coding downstream 55062 4237101 ~ 4290685 (+)
usp11 usp11,LOC107653430,LOC107743100,LOC107734528,LOC107584884 coding downstream 110442 4292481 ~ 4310462 (+)
uxt uxt,LOC107734525,LOC107601756,LOC107743136,LOC107674348,LOC107584886,LOC107653408 coding downstream 134446 4316485 ~ 4318124 (+)
elk1 elk1,LOC107653426,LOC107674356 coding downstream 137722 4319761 ~ 4334302 (+)
G60870 NA non-coding upstream 255739 3907712 ~ 3908800 (+)
G60803 LOC107552212,LOC107701823,LOC107743103,LOC107674315,LOC107727414 non-coding upstream 278666 3884882 ~ 3885873 (+)
G60782 NA non-coding upstream 338123 3824902 ~ 3826416 (+)
G60743 NA non-coding upstream 508607 3654761 ~ 3655932 (+)
LOC122350949 NA non-coding upstream 556562 3607315 ~ 3607977 (+)
G61007 NA non-coding downstream 119633 4301672 ~ 4342107 (+)
G61048 NA non-coding downstream 250959 4432998 ~ 4436499 (+)
G61056 NA non-coding downstream 256969 4439008 ~ 4444416 (+)
G61087 LOC107687770,LOC107743582,LOC107696015,LOC107572510,LOC107738665 non-coding downstream 316838 4498877 ~ 4499407 (+)
G61089 NA non-coding downstream 327965 4510004 ~ 4513565 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other upstream 90642 4029303 ~ 4073897 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other upstream 233051 3924861 ~ 3931488 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other upstream 313982 3848614 ~ 3850557 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 2124703 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 2128559 2030824 ~ 2035980 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 922531 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 1044913 5226952 ~ 5229608 (+)
G61678 LOC107665067,LOC107598994,LOC107757984 other downstream 2574066 6756105 ~ 6766543 (+)
G61713 LOC107550213,LOC107755291,LOC107599058,LOC107700515,LOC107757991,LOC107665059 other downstream 2666442 6848481 ~ 6849711 (+)
soat1 soat1,LOC107549691,LOC107700347,LOC107657858,LOC107758003 other downstream 3124080 7306119 ~ 7529086 (+)

Expression


Co-expression Network