usp11 (usp11,LOC107653430,LOC107743100,LOC107734528,LOC107584884)


Basic Information

Item Value
gene id usp11
gene name usp11,LOC107653430,LOC107743100,LOC107734528,LOC107584884
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 4292481 ~ 4310462 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246705.1
ACCGCTTCCTACTTCCTGCGTCAAAACATTCCGGTGTGTCTATGCGGCTTTAACGGCGCTTTTCGGATTTTATGAGTGATTATGGCTGCGAGCAGCAGCACCGGTTCGGCTACGGAGCCTCCGGGACTAGAAACCCAGTGGCGGGAGATCGACACCCTGAACCAGCAGCAGCTACGGGCCGGAGACAGCTGGTATTTGTTGGACAAAAGATGGTATGATCAGTGGAAAGAGTACGTGCATGCCGGTGACCAAAATTCCTCCTCGTATCCCGGGAAAATTGATAACACTGAGCTCTATGAAGATCTGGATTCCTATCATCTGAAAGAGAGGCTGTCTGAGAATGAAGACTTCGTCCTGGTCCCTGCAGAAGCCTGGCATAAACTTTTATCATGGTATGACATGATGGACGATCAACCTCCTTTGGAGAGAAAGGTTGTTGATCTTCCCAGCACTGTTAAAGTAGAGGTCTACCCCGTGGAGATCTACCTCTGTCTTTCTAGCAACATGGAGAGTACTGTATCTGCATCCTTCAGTCGAGCAGACAAGATACACGCTATTCATCAAAAGATACGGCAGCATTTTAACGTGCCGGATACTGCTGAGAGCCGACTGTGGATGAGGAGTACAGATACGAGCTCGGAGAGGCTACGCAACCTTAACATGACTGTCCTAGACTCCTGCCTCAGCTCCGGCAtgACGGTGATTATGGAGATCAGGAATGCGGATGGTACATGGCCCACATCCAGGCCTCAGATCATGCGGAACTCTGCTGACGAGGACTCGTATCGAGGGCCTCCCGGAGTGTGCGGCCTCACAAACTTAGGCAACACCTGTTTCATGAACTCGGCTTTACAGTGTCTGAGCAACACGCCACCACTGACTGAGTACTTCCTGAGGAACTCGTATCTGGAGGAGCTGAACTTCTCCAACCCACTGGGCATGAAGGGTGAAATTGCAGAAGCCTACGCAGATGTCATCAAACAGATGTGGTCAGGCAGGCACTATTCTGTGGTTCCTCGGGTGTTTAAGacTAAGGTTGGCCACTTTGCATCACAGTTTCTGGGCTACCAGCAACACGACTCTCAGGAGCTGCTGTCTTTCCTGTTGGACGGTCTACACGAAGACCTCAACCGGGTCAAAAAGAAGGAGTATATTGAACTCAGGGATGCTGACGGCAGACCTGATCAGGAGGTTGCTGAGGAAGCATGGCGCAACCATTTACGACGAAACGATTCGGTCATCGTCGACACATTCCACGGGTTGTTTAAGTCGACACTGGTGTGTCCCGAATGCAACAAGGTCTCTGTGACCTTCGACCCTTTCTGTTACTTGAGCGTGCCCTTACCTGTTAGTAAAGAGAGGGTCATGGAGGTGTTCTATGTATCGCTGGATCCCACAGCCAAACCCACCCAGTATCGTCTGATTGTACCTAAAGCTGGCCGAGTGATCGACTTGTGCACTGCCCTCTCTGAGGCAACAGACGTCCCTCCCAGCCAGATGGCGGTGGCTGATGTTTTCAATCACCGCTTCTATAGGATTTACCAGGCTGACGAATCCTTAAGCTGTATATTGGACCGGGATGATATATTTGTGTATCAGCTGAGCAGTGGTTGTGTGGATCAGGATGGTGAGGAGGTGGTTATGGCCATCTATATGCGTGAACGCTCCCATTACAGAGATTACGGCTCTGGAAGCAACAGCTATGGCACGTCCCTGTTCGGTCATCCGCTGCTGATGTCTGTGCCACGCGCTCAGTGCACACGAGAAGATCTCTACCAGCTCCTCCTGAAAAGACTAGCTCGATACGTCCGTCCTCTAGACCCTTCAGAAGAAgtagaggaggaagaagaagatgatgagGAAGAGTTGTATAAGGCACAGACCAACGGAGTTAGTGATGATGAGGGCGAGGAAGACTCTGAGGAGGCAGGGCCATCCAAGAAAGAGGAAGAGCCTCAAGAAAGCGGCCAGACCGAAAAGCAGAACAACTGCCAATCAGAAGCCAGCCCGAGCAGCGAAGGGGAGGAGAGAGCTGAGGAGGAGGAGTCGAGCAGCGAACCGGACCGGGGCAGCAGTACCGAGGAGGGCCAATCGGCATGCGGCAGCACCGACACCAACTCTCAAGACGCCACTGACGGGGACCAAAGTGCTGGTGCTGAGCCGTCGGGAAAGGAGGAAGAGGACGAAGATGAGgacgaggaggaagaagaggaggccGCATCTTGCGCTCAGGCAAACAAGAGGCTTCCGGGAAGACGGCGCTGTACTGAGAGGCAGAAAAAAGCCCTTTTTACCATTCAGGCGGTGAATTCTAATGGCACCACGGAGCGAGGGATGGGAGAAGCGGACGGTGGCTTCTCTTTCAGCTCTCAACCATACATCGCCATCGACTGGGACCCTGACATGAAGAAGAAGTACTACAATGAGAACGAAGCCGAGAAGTATATAAAGCATCAGAGCATGGATGTCCCTCACCTGCCAACCACGGTGCAGCTGCAGGAATGTATAGAGCTCTTTACCACGGTAGAGACACTGGAAGAGGAAAACCCCTGGTATTGTCCAACATGTAAAAAGCATCAGCTTGCCACTAAGAAATTGGATCTGTGGTCTTTGCCTGAGGTTCTTATCATCCATTTAAAGCGCTTCTCCTACACAAAATACTCTCGAGAGAAACTGGATACCATCGTGGAGTTCCCCCTGCGGGATCTGGACTTCTCAGGTTTCCTCCTAAAGAAGACGGTGAACAGTACTGAACCTCCCTGTAGATATGACCTGATCTCCGTGTCCAACCACTATGGCGGACTCCGAGATGGGCACTATACTAGTTATGCCCGGAACAAGGACAACGGTCAGTGGTATTATTTTGACGACAGCAAGGTGACCTATGCAAGGGAGGAGCAAATAGTGACCAGTGCCGCCTACCTCCTGTTCTACCAGCGCCAAGACAAGATCCGCCAGCCCACCGTTCCTCTACCCGTCCCTTCCTCCAGCCAGTCCGAGAACCACGTCTCGCCCCAGACGCACGACGGCGTGGACGGAGCCTCTTCCTGTGTCAGCATGGAGACGGACTGATTCCTGCCCTTTTGTCTTTCACGCATTCCACTTCATTCTCTCTCACTTTTATCTTTTCTGGCATACTGTCGATCATCTTAATCAACAGAAACTTGAACCTCCGCCTCCGCTCTGACTCCCGACAGGAAGTGCGAGGCAGGGGCACCTCTCTCAGGCTGGTGCACGAGCATCATGGGGTGGGAATGTAGATTTAGTGTgtttttcgtttgtttgtttttctgtatgaCGAACTCAAGGAAACGGGTTAGGCTGGTAGCGGCGGATTCAGATATTGTCGCGCAGCGCTTCAGTGACGATGAGGATTCGAAGAATGAGGTTTGCGTCACAGTTCATCATCACCGAcgtgttctttattttttcctaaGCTTGCTTTTCTGAGCTAGCTCAGCTGCTGTCCACAGTGGTGATGTTTGATCTGAACGTACAACCTTCAGCCGCGCCGTTTAGCGTCATGAATCGGTTTATTCCATCTCATTGTAGCGACGTTCATCGCGGGATCTTTCTGCAGGGGCGGTTGGGGTTTCTCATATCAGGGATGTCACGTTCAGAAATCCTGCTTCAGATTTCTAAGATCTTGTAAAAAGGTGTGGGTGTGGAGGTATATGAGGTATAGCTTTCTGTCCACTCACtcgtgaaatatttattttcataattgctAACGTGGAGTGAGAGATTGTAATTCTAAAGAGCGGCTTCTAAAGatcttccatttttattttctttctcgtgatgttttttttttttccgtctgGGAAAATCCACTCTGTTGCGGGACACAAACGGAGGCTTGTTTTCCAGCgagaattagctttttttttttttatcttaattgaAAGGAGATGAACAGCaagatttaaatattacattctttttgACTAACTGCGTGCAATTTATAACAAACTCTTTGGAGCAATGAGAATATTTCAGCAAAGTGCTTTCTGGATAGAGCTCTTTACGTGATGATTTTTAAGGCACCTctgtacagtatttttgtattgtaataaatgttgtattatCTTTGATCATTTGGATCAGATGCTGGGAATGTGGgagctttcattttattttgttaattatagattgaatatataattgtatacaCATcttttgatataaataaatgctgactATAAAGTCGAGGTTAGATTGGA

Function

symbol description
usp11 Predicted to enable thiol-dependent deubiquitinase. Predicted to act upstream of or within protein deubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human USP11 (ubiquitin specific peptidase 11).

NR:

description
ubiquitin carboxyl-terminal hydrolase 11

GO: NA

KEGG:

id description
K11835 USP4_11, UBP12; ubiquitin carboxyl-terminal hydrolase 4/11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246705.1 True 4223 mRNA 0.49 21 4292481 4310462

Neighbor

gene id symbol gene type direction distance location
grm6a grm6a,LOC107601768,LOC107653428,LOC107743101,LOC107674373,LOC108439669,LOC106566502 coding upstream 1796 4237101 ~ 4290685 (+)
comta LOC107601759,LOC107584930,LOC107674306,LOC107653432,LOC107743139,LOC107727411 coding upstream 66234 4218418 ~ 4226247 (+)
srpk3 srpk3,LOC107743111,LOC107727421,LOC107601770,LOC107584918,LOC107674354 coding upstream 110442 4164539 ~ 4182039 (+)
plxnb3 plxnb3,LOC107701812,LOC107743121,LOC107727420,LOC107674349,LOC107584917,LOC107601751 coding upstream 129918 4093252 ~ 4162563 (+)
abcd1 abcd1,LOC107701814,LOC107743108,LOC107552221,LOC107727428,LOC107674359,LOC108265308 coding upstream 201452 4075018 ~ 4091029 (+)
uxt uxt,LOC107734525,LOC107601756,LOC107743136,LOC107674348,LOC107584886,LOC107653408 coding downstream 6023 4316485 ~ 4318124 (+)
elk1 elk1,LOC107653426,LOC107674356 coding downstream 9299 4319761 ~ 4334302 (+)
si:ch211-180f4.1 si:ch211-180f4.1,LOC107601766,LOC107743097,LOC107653421,LOC107734538,LOC107674375,LOC107584888,LOC108441099 coding downstream 33413 4343875 ~ 4365977 (+)
otud5a otud5a,otud5,LOC107653422,LOC107743098,LOC107601748,LOC107734530,LOC107584889,LOC107674365 coding downstream 57072 4367534 ~ 4392066 (+)
pim2 LOC107653424,LOC107674377,LOC107734537,LOC107601747,LOC107578221 coding downstream 82745 4393207 ~ 4397088 (+)
G60895 NA non-coding upstream 77275 4140609 ~ 4215206 (+)
G60870 NA non-coding upstream 383681 3907712 ~ 3908800 (+)
G60803 LOC107552212,LOC107701823,LOC107743103,LOC107674315,LOC107727414 non-coding upstream 406608 3884882 ~ 3885873 (+)
G60782 NA non-coding upstream 466065 3824902 ~ 3826416 (+)
G60743 NA non-coding upstream 636549 3654761 ~ 3655932 (+)
G61048 NA non-coding downstream 122536 4432998 ~ 4436499 (+)
G61056 NA non-coding downstream 128546 4439008 ~ 4444416 (+)
G61087 LOC107687770,LOC107743582,LOC107696015,LOC107572510,LOC107738665 non-coding downstream 188415 4498877 ~ 4499407 (+)
G61089 NA non-coding downstream 199542 4510004 ~ 4513565 (+)
G61108 NA non-coding downstream 346878 4657340 ~ 4657662 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other upstream 218584 4029303 ~ 4073897 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other upstream 360993 3924861 ~ 3931488 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other upstream 441924 3848614 ~ 3850557 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 2252645 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 2256501 2030824 ~ 2035980 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 794108 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 916490 5226952 ~ 5229608 (+)
G61678 LOC107665067,LOC107598994,LOC107757984 other downstream 2445643 6756105 ~ 6766543 (+)
G61713 LOC107550213,LOC107755291,LOC107599058,LOC107700515,LOC107757991,LOC107665059 other downstream 2538019 6848481 ~ 6849711 (+)
soat1 soat1,LOC107549691,LOC107700347,LOC107657858,LOC107758003 other downstream 2995657 7306119 ~ 7529086 (+)

Expression


Co-expression Network