uxt (uxt,LOC107734525,LOC107601756,LOC107743136,LOC107674348,LOC107584886,LOC107653408)


Basic Information

Item Value
gene id uxt
gene name uxt,LOC107734525,LOC107601756,LOC107743136,LOC107674348,LOC107584886,LOC107653408
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 4316485 ~ 4318124 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246709.1
ACGCTTCCGTGTATCTTGTAAACAAGTGGAGAGCCACGTGACAGGCTGAAGGAAGGTTTAGCTTCACACAGGCGagcattttctattaaaatacattcatttgtcagcttttttttttatcgctgCATCAGCGCAGCGACGGGCTGTCGATTTCAGATGCACGTTAATTGTAGAAACACAGgctaagattaaaataaatatcgcTGTATCATAGTCTATCTGCAACCATCTTTTTCTCATATCATGACTCCTGAGGCGACTGGTATTAATGAAAAAGTCTTGCAGTATGAGACGTTTATCAATGAAGTATTGAAAGGAGACTTACAGAAAGTATTAGAGCAAAGAGATGCTGTGTATGAGAAAATAGCACAATACCTtcagctgaaaaacacaattaaaagcaTTCAGGAGACCGACAGCAAAGAACTCAAAACAGATGTTGACCTTGGCTGCAATTTCTACGTGCAGGCTCATGTacctgatgcatcaaaaatatatgtGGCAGTTGGGTATGGATTCTTTGTCGAATTCACACATGAGGAGGCTTTGAAGTTTATAGAAAAGAAAACGAATCAGCTAACAGAGTATACGGAGGTCCTTACCAAAGATGCAGCAAAGATAAAGGCCAACATACGCATGGTTTTGGAGgGTTTGAGGGAATTGCAAGGTCTGAAAGATCTTCCAGAGGACAGAAGGAGAGAGGTGTTTTAGTACAGTGCACCAAACGTAGAACAGTGTATTAAATTTGCACATATGACTGTAATGTTTGTTTCAAACAATGTGAACTTTATGGCAGTCAGGTTCAGCGGAACGTTGCCTTTTAACAGGTTATACTGTTGTTTTGAAAAgtttgctgaataaatgcattttcagtacAA

Function

symbol description
uxt Predicted to enable transcription corepressor activity. Acts upstream of or within angiogenesis and negative regulation of Notch signaling pathway. Located in chromatin. Is expressed in head and trunk. Orthologous to human UXT (ubiquitously expressed prefoldin like chaperone).

NR:

description
PREDICTED: protein UXT isoform X1

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0016272 prefoldin complex cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246709.1 True 878 mRNA 0.39 6 4316485 4318124

Neighbor

gene id symbol gene type direction distance location
usp11 usp11,LOC107653430,LOC107743100,LOC107734528,LOC107584884 coding upstream 6023 4292481 ~ 4310462 (+)
grm6a grm6a,LOC107601768,LOC107653428,LOC107743101,LOC107674373,LOC108439669,LOC106566502 coding upstream 25800 4237101 ~ 4290685 (+)
comta LOC107601759,LOC107584930,LOC107674306,LOC107653432,LOC107743139,LOC107727411 coding upstream 90238 4218418 ~ 4226247 (+)
srpk3 srpk3,LOC107743111,LOC107727421,LOC107601770,LOC107584918,LOC107674354 coding upstream 134446 4164539 ~ 4182039 (+)
plxnb3 plxnb3,LOC107701812,LOC107743121,LOC107727420,LOC107674349,LOC107584917,LOC107601751 coding upstream 153922 4093252 ~ 4162563 (+)
elk1 elk1,LOC107653426,LOC107674356 coding downstream 1637 4319761 ~ 4334302 (+)
si:ch211-180f4.1 si:ch211-180f4.1,LOC107601766,LOC107743097,LOC107653421,LOC107734538,LOC107674375,LOC107584888,LOC108441099 coding downstream 25751 4343875 ~ 4365977 (+)
otud5a otud5a,otud5,LOC107653422,LOC107743098,LOC107601748,LOC107734530,LOC107584889,LOC107674365 coding downstream 49410 4367534 ~ 4392066 (+)
pim2 LOC107653424,LOC107674377,LOC107734537,LOC107601747,LOC107578221 coding downstream 75083 4393207 ~ 4397088 (+)
slc35a2 LOC107743096,LOC107674336,LOC107653423,LOC107734533,LOC107601764,LOC107584890 coding downstream 81790 4399914 ~ 4410079 (+)
G60895 NA non-coding upstream 101279 4140609 ~ 4215206 (+)
G60870 NA non-coding upstream 407685 3907712 ~ 3908800 (+)
G60803 LOC107552212,LOC107701823,LOC107743103,LOC107674315,LOC107727414 non-coding upstream 430612 3884882 ~ 3885873 (+)
G60782 NA non-coding upstream 490069 3824902 ~ 3826416 (+)
G60743 NA non-coding upstream 660553 3654761 ~ 3655932 (+)
G61048 NA non-coding downstream 114874 4432998 ~ 4436499 (+)
G61056 NA non-coding downstream 120884 4439008 ~ 4444416 (+)
G61087 LOC107687770,LOC107743582,LOC107696015,LOC107572510,LOC107738665 non-coding downstream 180753 4498877 ~ 4499407 (+)
G61089 NA non-coding downstream 191880 4510004 ~ 4513565 (+)
G61108 NA non-coding downstream 339216 4657340 ~ 4657662 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other upstream 242588 4029303 ~ 4073897 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other upstream 384997 3924861 ~ 3931488 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other upstream 465928 3848614 ~ 3850557 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 2276649 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 2280505 2030824 ~ 2035980 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 786446 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 908828 5226952 ~ 5229608 (+)
G61678 LOC107665067,LOC107598994,LOC107757984 other downstream 2437981 6756105 ~ 6766543 (+)
G61713 LOC107550213,LOC107755291,LOC107599058,LOC107700515,LOC107757991,LOC107665059 other downstream 2530357 6848481 ~ 6849711 (+)
soat1 soat1,LOC107549691,LOC107700347,LOC107657858,LOC107758003 other downstream 2987995 7306119 ~ 7529086 (+)

Expression


Co-expression Network