grm6a (grm6a,LOC107601768,LOC107653428,LOC107743101,LOC107674373,LOC108439669,LOC106566502)


Basic Information

Item Value
gene id grm6a
gene name grm6a,LOC107601768,LOC107653428,LOC107743101,LOC107674373,LOC108439669,LOC106566502
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 4237101 ~ 4290685 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246706.1
gggaggggaGGGGGAATCGGGCTTTTAAGAGATTTGATAGAGATTAGAAGCGGCACAGTGTTGAGAAATATTGTATGTTCGATACGAATCTCATTTCATGGTGAAAAGGCAGAGAGCGCGCGCGAGGACGCGGACGGAGCTGCGGAAGGCGCCACTGAACGAACGAACGAAGCCATGAAGAAGAGCTCCGGGCTTTTTGTAAACAGGTCATAGGTGATCCCGGCAGGTCAGAGGTGAACTGAACAACTGCCAAAAGCTTCAGGTGGTTTGAGCGAGTCGTAATGTCCTCGAGGGTTTGAGGAGGTCGTGGATGTCTCGACGGACCCCTGGAGAAAGTTCAACATCAGGATGAACAGGTTCCCCAGATAGTGGATGAACGCTTGCGTGTTTGATTCCTGGTCGTTATGACATCAGATCCTCCTCCGTTGTCATTGGACGATCAGGTCGGGATGTCCCGGGTTTTAAGCTGGAGCAGCTGTCACTCTACCACATGGCCACGCCTCCTATGGATTCTGTGGGTGTGGCTAAGCCCATGTTTTTCAGTTCATCAGCACTCGCACCCACATTCCATCAAAATCCCAGGGGACATCACCTTGGGGGGTCTTTTCCCGGTGCACGCCAGGGGTCATGCTGGGGTCCCATGtggagaaataaagaaagaaaaaggaattcATCGTTTGGAGGCCATGCTGTACGCTCTGGACCAGATCAACAGTGACCCAGAACTTCTCCCCAACATCACTCTAGGGGCCCGGATCCTCGATACGTGTTCCAGGGACACTTACGCTCTAGAGCAGTCTCTGACATTTGTCCAGGCCCTAATTCAGAAAGACACGTCTGACATCCGCTGCTCCAACGGAGAACAGCCAATCATACGCAAGCCCGAGCGCGTGGTGGGTGTGATCGCGTCAGGCAGCTCGGTGTCCATCATGGTGGCCAATGTCCTCCGGCTGTTTGAGATCCCTCAGATTAGCTACGCCTCCACAGCACCAGAGCTGAGCGACAATAACCGCTACGACTTCTTCTCTCGAGTGGTACCTCCAGACTCATACCAGGCCCAAGCTATGGTGGACATCGTGAAGGCGATGGGTTGGAACTATGTCTCCACATTAGCATCGGAAGGGAACTACGGTGAAAGTGGAGTAGACGCCTTCATTCAGATCTCTCGAGAGGCAGGAGGTCTATGCATCGCTCAGTCCATGAAGATCCCACGAGAACCCAAACCAGGAGAGTTTGACAAGATCATTAAGAGACTAATGGAGACCCCCAACGCTCGAGGAGTCATCATCTTCGCCCACGAAGACGACATCAAGCAGGTACTGGAGGCTGCAAGGAAGGCCAATTTGACCGGTCAGTTCAAGTTTGTGGGATCGGACAGCTGGGGTGCCAAGAGCTCTCCGATCCTGGACCAGGAGGAAGTGGCTGAGGGTGCCGTCACCATTCTTCCCAAAAGAGCATCAATTGAAGGATTTGACCAGTACTTCACCACTCGTTCCCTGGAGAACAACCGCAGGAATATCTGGTTTGCTGAATTCTGGGAGGACGACTTCAGGTGCAAACTGACACGTCCAGGTATCAAGATCGACccagaaaagaagaaatgcaCAGGAGAGGAACGGATCAGTCGTGATTCTCATTATGAGCAAGAGGGCAAGGTTCAGTTTGTAATTGATGCGGTTTACGCTATGGCTCATGCTTTGCACAACATGCACCAGGATTTGTGCCCGGGAGCCACGGGCGTTTGTGATAAGATGGACCCAGTGGAGGGACGTTTGCTGCTTAGCTACATCCACTCCGTCAACTTCAATGGTAGTGCTGGCACTGCTGTTCTGTTTAATGAAAACGGTGATGCTCCTGGACGCTATGACATCTTTCAGTACCAGATGACCAACACTACCAATCCAGGATACAGAGTCATTGGACAGTGGACCAATAACCTGCGACTCAATGTGGAAGAGATGCAGTGGACCGGTGGATCCCGCGTGATTCCGGACTCGGTGTGCAGTTTTCCGTGCCGCTCGGGCGAGAGGAAGAAGATGGTGAAGGGTGTCCCGTGCTGCTGGCACTGTGAGCTATGTGACGGCTATCAGTTCCAAGCTGACGAGTTTAACTGCGAGATGTGCCCTTTCGACATGCGTCCGACCCCCAACCGCACGGCCTGCCGCCCCACTCCCATCATCAAGCTGGAGTGGCATTCGCCCTGGGCCGTGATCCCTCTGTTCCTCGCCATCCTCGGCATCCTGGCCACGCTGTCCGTCATCATCACCTTCATCCGCTTCAACGACACCCCCATCGTGAGGGCCGCGGGCCGCGAGCTCAGCTACGTGCTGCTGACGGGGATCTTCCTCATCTACCTCATCACCTTCCTCATGATCGCTGAGCCGGGGACGGTGGTGTGTGCTTTCCGCCGGCTGCTGCTGGGGCTGGGCATGTGCATTACGTACTCGGCCATGCTTACGAAGACCAACCGGATCTACCGCATCTTCGAGCAGGGAAAGAAGTCCGTCACGCCGCCAAAATTCATCAGCCCCACATCACAACTTATGATCACCTTCATACTGATCTCAGTACAGGTTGTGGGTGTTTTCATCTGGTTCGGTGTGATGCCGCCACACACCATCGTGGACTACGAGGAGCAGCGGCCGCCCAATCCAGAGTTGGCGCGTGGCATCCTAAAGTGTGACATGTCTGATTTGTCGCTCATCTGTTGCCTGAGCTACAGTATCGTGCTCATGGTCACGTGCACTGTGTATGCGGTCAAGAGCCGAGGCGTTCCTGAGACCTTCAACGAAGCTAAGCCCATCGGCTTCACCATGTACACCACCTGCATCGTCTGGCTGGCATTCGTGCCTATTTTCTTTGGCACAGCGCAGTCCACTGAGAAGATGTTCATCCAGACGACGACGCTGACCGTGTCCATGAGTCTGAGTGCCTCGGTGTCTCTGGGGATGCTCTACATCCCGAAAGTCTACGTCATCATCTTCCACCCGGAGCAGAACGTGCAGAAGCGCAAGCGCAGCTTCAAGGCTGTGGTTCAAGCCGCCACCATGTCCTCACGCCTCTCACAGAAATCCATCAATGACAAGCAGAACGGAGAGACCAAGATCGAGCCAGACAGGACGCAGTAGCAGGTGACCCCTGGAACAGCTGTGTGGATCTCAAATCACAGAGGAACAGAGTCAAAGGGGGAGTTTTGCTGTGTTGTATTTTGTGATGCCAGGTGAGGATGTTAATAAAGTCGATGTTACTGACTGTGAAGCACAAACTGCTAACACTGCGAACAGAAAATACTGTATTGAGCATCTTTGTCGAACACTTGAAATGCTTCATAGATAGAATGTGCCCAAAAGCCTTTTCTCATCCAGAGGATTTTTGCGGATCGCACAATGCAATTTggaaaaatctctttttttgtccCATTTTTATCTCAGAAAGGTTTCGTGTGGTTATCGTATTGAAGTTTTAGCATGAGGCAAACTTTGGACATGCACGCACTAACCAAGTAAAAACGTATGAAACATTACAGATCCTGACTGACGCTGAAGAAAAACTCTCCTCACTTTTAACCGTACGGCAAAGTCACTGCTTCGTCAGCTCATAatgcacaattttattttagatcgTAAGCTCAAAACATGAAGTAGACACTATTTTGAGCCAGTTGTGTATTTGATAGCTTTGTGCAtcttatatctatttatttaaacgaTTCTAACTAGGTGTTATTAATTAGctcttctatttatttatttatttttatttttggaaatgtatttatttattactgatgATTGATCTCCTTGGCCAAAGACATGTTGGTGCTTTTATAAAGAAAACCTGTAGGAAAGGACGCAGTGAAATATCAATACAGCATCCAGAGCGCCACGTTAAAGAAACAGTGTACAGTTTAACTTGTTCAACATTGTAAATAGAAGAGTCTGCAGAAGGCTaatggatgttttattttgtgtcttgAGGCggttattttgtgtttgatcGACAATATGCATGGGAAACTCTATCTGAAAAGTCTTACTGTGTTACATGAGTAACATGACTGCTGTGTTTTGCTCACATCACATTAAAGAAATGTAGTTCATGTCTTTCTATTCGCTATTTTTACATCAGTGTTTTAGGATGTCCGTATGTATTCTGCTGAGTTCATAATGCTTAAGTAAATGCAACACAACATTGGCTGTGTCTATGAAGATGTCATATTTAAAAGCGGTATTGATGTTGAATGGTACAATCGATAATAGAAAGAGCAAAGCGATCAATTGTAATTAAACAGACTGCTGATGGTCGGAATGCTTTGCCACAATAATTCCTACATGAAGTAACAAACAGTGGGATGCtgtgctgtaaataaaactcattGTTTTTCTGAA

Function

symbol description
grm6a Predicted to enable group III metabotropic glutamate receptor activity. Predicted to be involved in G protein-coupled glutamate receptor signaling pathway and regulation of glutamatergic synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain and retinal neural layer. Human ortholog(s) of this gene implicated in congenital stationary night blindness 1B. Orthologous to human GRM6 (glutamate metabotropic receptor 6).

NR:

description
PREDICTED: metabotropic glutamate receptor 6-like

GO:

id name namespace
GO:0007196 adenylate cyclase-inhibiting G protein-coupled glutamate receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0001642 group III metabotropic glutamate receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246706.1 True 4388 mRNA 0.49 13 4237101 4290685

Neighbor

gene id symbol gene type direction distance location
comta LOC107601759,LOC107584930,LOC107674306,LOC107653432,LOC107743139,LOC107727411 coding upstream 10854 4218418 ~ 4226247 (+)
srpk3 srpk3,LOC107743111,LOC107727421,LOC107601770,LOC107584918,LOC107674354 coding upstream 55062 4164539 ~ 4182039 (+)
plxnb3 plxnb3,LOC107701812,LOC107743121,LOC107727420,LOC107674349,LOC107584917,LOC107601751 coding upstream 74538 4093252 ~ 4162563 (+)
abcd1 abcd1,LOC107701814,LOC107743108,LOC107552221,LOC107727428,LOC107674359,LOC108265308 coding upstream 146072 4075018 ~ 4091029 (+)
mbd1a LOC107743107,LOC107701816,LOC107552163,LOC107584915,LOC107727404 coding upstream 209399 4013914 ~ 4027702 (+)
usp11 usp11,LOC107653430,LOC107743100,LOC107734528,LOC107584884 coding downstream 1796 4292481 ~ 4310462 (+)
uxt uxt,LOC107734525,LOC107601756,LOC107743136,LOC107674348,LOC107584886,LOC107653408 coding downstream 25800 4316485 ~ 4318124 (+)
elk1 elk1,LOC107653426,LOC107674356 coding downstream 29076 4319761 ~ 4334302 (+)
si:ch211-180f4.1 si:ch211-180f4.1,LOC107601766,LOC107743097,LOC107653421,LOC107734538,LOC107674375,LOC107584888,LOC108441099 coding downstream 53190 4343875 ~ 4365977 (+)
otud5a otud5a,otud5,LOC107653422,LOC107743098,LOC107601748,LOC107734530,LOC107584889,LOC107674365 coding downstream 76849 4367534 ~ 4392066 (+)
G60895 NA non-coding upstream 21895 4140609 ~ 4215206 (+)
G60870 NA non-coding upstream 328301 3907712 ~ 3908800 (+)
G60803 LOC107552212,LOC107701823,LOC107743103,LOC107674315,LOC107727414 non-coding upstream 351228 3884882 ~ 3885873 (+)
G60782 NA non-coding upstream 410685 3824902 ~ 3826416 (+)
G60743 NA non-coding upstream 581169 3654761 ~ 3655932 (+)
G61007 NA non-coding downstream 10987 4301672 ~ 4342107 (+)
G61048 NA non-coding downstream 142313 4432998 ~ 4436499 (+)
G61056 NA non-coding downstream 148323 4439008 ~ 4444416 (+)
G61087 LOC107687770,LOC107743582,LOC107696015,LOC107572510,LOC107738665 non-coding downstream 208192 4498877 ~ 4499407 (+)
G61089 NA non-coding downstream 219319 4510004 ~ 4513565 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other upstream 163204 4029303 ~ 4073897 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other upstream 305613 3924861 ~ 3931488 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other upstream 386544 3848614 ~ 3850557 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 2197265 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 2201121 2030824 ~ 2035980 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 813885 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 936267 5226952 ~ 5229608 (+)
G61678 LOC107665067,LOC107598994,LOC107757984 other downstream 2465420 6756105 ~ 6766543 (+)
G61713 LOC107550213,LOC107755291,LOC107599058,LOC107700515,LOC107757991,LOC107665059 other downstream 2557796 6848481 ~ 6849711 (+)
soat1 soat1,LOC107549691,LOC107700347,LOC107657858,LOC107758003 other downstream 3015434 7306119 ~ 7529086 (+)

Expression


Co-expression Network