LOC111194381


Basic Information

Item Value
gene id LOC111194381
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31627040 ~ 31632925 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU197370
acatttatttattgatttattgccacatttattaatttatttatttctgtatttctgcatttgtatgATAGTTAGGTAGGCGGTCCTATCCTCGCTCTAAAGCAGGATTGGTTTTTGAGCTGCAAAAGTTTTGGTTCTACTGCTTGTCACTACCCGATCTGTACCCCCTGCCCGATTTGTTCCGCGCATGCGCACGCATGCGCATTGCAAACTGAGCAGGGGCACAGATCAGGTAGGCAATGCCAAGTTGTGGTTCCGCTCACACTGTCGCAAACAGCTTGTAAAACGCGGTTTCAAAATGAAGGACTTACGTTTTTACAGAGCTCTGAAAGAGTACATTTTAAGTGGAACATTTACTCCAccatgcaacaaaaaaatgcGCAAGGAAATGCGGCGTGTGTCTGAAAACTTCATAGCAAAAGGTAAGTTAAAATCATATCATATTTTAGAAAGGTTTGCGTTAGCTGAGGAAGCGAAGTGTCCCGTTATGTGAACTAGTTAGTATAGCTAGGTTAACTATGCTAGCTAATTTAGCTCggagtattttattatatcaataagtaattaaatatgaaacgtgttttttt
>TU197371
acatttatttattgatttattgccacatttattaatttatttatttctgtatttctgcatttgtatgATAGTTAGGTAGGCGGTCCTATCCTCGCTCTAAAGCAGGATTGGTTTTTGAGCTGCAAAAGTTTTGGTTCTACTGCTTGTCACTACCCGATCTGTACCCCCTGCCCGATTTGTTCCGCGCATGCGCACGCATGCGCATTGCAAACTGAGCAGGGGCACAGATCAGGTAGGCAATGCCAAGTTGTGGTTCCGCTCACACTGTCGCAAACAGCTTGTAAAACGCGGTTTCAAAATGAAGGACTTACGTTTTTACAGAGCTCTGAAAGAGTACATTTTAAGTGGAACATTTACTCCAccatgcaacaaaaaaatgcGCAAGGAAATGCGGCGTGTGTCTGAAAACTTCATAGCAAAAGGTAAGTTAAAATCATATCATATTTTAGAAAGGTTTGCGTTAGCTGAGGAAGCGAAGTGTCCCGTTATGTGAACTAGTTAGTATAGCTAGGTTAACTATGCTAGCTAATTTAGCTCggagtattttattatatcaataagtaattaaatatgaaacgtgttttttt
>XR_002651051.1
TAAATGAATCTTTACCTTGGTGCCCCTGCGCATCAGCCCAGTTCAACCCGTGCGGTTTCTCGTAGCACTTGGCGCGCGGATTCCTCAAACATTACAACATCCTCAACTGTCAGCTATCCTGAAACCTTTGAAGTTTGTAGAGCTCTGAAAGAGTACATTTTAAGTGGAACATTTACTCCAccatgcaacaaaaaaatgcGCAAGGAAATGCGGCGTGTGTCTGAAAACTTCATAGCAAAAGgtgaagTGTTGTCGCCGCTGCCAACTAAATGACCCCATGAAGACGGGGACACCAGTGTTACATTCTATTAAGGTGAAGGCTGCATGGGAGGTGATTGGCCTGGATTTAATTGGCCCACTGCGAGAAACTggt
>XR_002651052.1
tcaacatttctaacatttatttattgatttattgccacatttattaatttatttatttctgtatttctgcatttgtatgATAGTTAGGTAGGCGGTCCTATCCTCGCTCTAAAGCAGGATTGGTTTTTGAGCTGCAAAAGTTTTGGTTCTACTGCTTGTCACTACCCGATCTGTACCCCCTGCCCGATTTGTTCCGCGCATGCGCACGCATGCGCATTGCAAACTGAGCAGGGGCACAGATCAGGTAGGCAATGCCAAGTTGTGGTTCCGCTCACACTGTCGCAAACAGCTTGTAAAACGCGGTTTCAAAATGAAGGACTTACGTTTTTACAGAGCTCTGAAAGAGTACATTTTAAGTGGAACATTTACTCCAccatgcaacaaaaaaatgcGCAAGGAAATGCGGCGTGTGTCTGAAAACTTCATAGCAAAAGgtgaagTGTTGTCGCCGCTGCCAACTAAATGACCCCATGAAGACGGGGACACCAGTGTTACATTCTATTAAGGTGAAGGCTGCATGGGAGGTGATTGGCCTGGATTTAATTGGCCCACTGCGAGAAACTggt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197370 True 587 lncRNA 0.39 2 31629258 31630741
TU197371 False 587 lncRNA 0.39 2 31629258 31630741
XR_002651051.1 False 373 lncRNA 0.47 4 31627040 31632925
XR_002651052.1 False 566 lncRNA 0.44 3 31630143 31632925

Neighbor

gene id symbol gene type direction distance location
acox3 acox3 coding upstream 7508 31597346 ~ 31619532 (+)
man2b2 man2b2 coding upstream 42067 31572241 ~ 31584973 (+)
ccnb1ip1 ccnb1ip1 coding upstream 60302 31563778 ~ 31566738 (+)
oxa1l NA coding upstream 99133 31522021 ~ 31527907 (+)
LOC103022147 NA coding upstream 116364 31506176 ~ 31510676 (+)
LOC103032972 LOC103032972 coding downstream 33874 31666799 ~ 31670129 (+)
LOC103032447 LOC108428553,LOC106608959,LOC103364796 coding downstream 51303 31684228 ~ 31707955 (+)
rbpj rbpj,rbpjb,LOC107597867,LOC107707427,LOC107549731 coding downstream 140579 31773504 ~ 31859657 (+)
stim2 stim2,LOC107707336,LOC107661953,LOC107684943,LOC107757910 coding downstream 301798 31934723 ~ 32002483 (+)
dthd1 NA coding downstream 2379557 34012482 ~ 34025373 (+)
G145868 NA non-coding upstream 78 31624722 ~ 31626962 (+)
G145859 ttc5,LOC107738047 non-coding upstream 59158 31566937 ~ 31567882 (+)
G145854 NA non-coding upstream 74931 31550533 ~ 31552109 (+)
G145837 NA non-coding upstream 121543 31503507 ~ 31505497 (+)
G145843 LOC103036756,LOC108434598 non-coding upstream 126534 31499125 ~ 31500506 (+)
G145875 NA non-coding downstream 15601 31648526 ~ 31649885 (+)
G145966 NA non-coding downstream 103871 31736796 ~ 31739792 (+)
G145968 NA non-coding downstream 105857 31738782 ~ 31739107 (+)
G145969 NA non-coding downstream 124172 31757097 ~ 31757667 (+)
G145974 NA non-coding downstream 156020 31788945 ~ 31848894 (+)
G145748 mus81 other upstream 272596 31352296 ~ 31354444 (+)
G145711 chd3 other upstream 404706 31197218 ~ 31222334 (+)
LOC103044823 NA other upstream 497017 31063439 ~ 31130023 (+)
LOC103022860 LOC103022860 other upstream 712203 30911831 ~ 30914837 (+)
G145543 NA other upstream 954853 30668799 ~ 30672187 (+)
smim20 NA other downstream 84217 31717142 ~ 31719051 (+)
tbc1d19 tbc1d19,LOC107660707 other downstream 259601 31892526 ~ 31926550 (+)
trnae-uuc_22 NA other downstream 438389 32071314 ~ 32071563 (+)
G146104 NA other downstream 979200 32612125 ~ 32612562 (+)
pcdh7 pcdh7,LOC107568147,LOC107684944,LOC107561555,LOC107681559,LOC107753999 other downstream 1246765 32879690 ~ 33104229 (+)

Expression


Co-expression Network