G51558


Basic Information

Item Value
gene id G51558
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3117858 ~ 3118356 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU58739
GGAATGACGTGAGTGTGAGTAGATAATGACAGAATTTTCTAAATAAAAACTAAATGTTTGGTTCATGGTTATTATTACTAAAAGTAAAACCATAAAAAAAAATTAATTACTTGAAATAAAATAAAATATAAAATAAATTAATTTACTTTAATTTGCAGTACTAAAATAACTAAAATTAAATAAACCTAAAACTTAACACTACAGTATATGGGCAATATATGCGGGGAAATAAAAAAAAAAAAACACAAAGCAAAATTACTAAAATAAAACTTAAAATAAAAATAAAATCTAATTCAAAAAAAATATATATACTAGTTTATCAATTATACTAAAATAATGTTTTGGGTGATCTATCCCTTAATACATAACTTTTACATGCACATTTACACAGTAATCTATTCTGGGTCACTGCATGGTCAAGTTCTACACCTGACAAAGAGTGATGACACTCTGCTGTAATGTTTGCAATGTCGAATGTGCACACTGTTGCAAGAGGTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58739 True 499 lncRNA 0.26 1 3117858 3118356

Neighbor

gene id symbol gene type direction distance location
CI01000009_02918681_02973307 KDM6A coding upstream 143906 2918681 ~ 2973952 (+)
CI01000009_02799246_02827589 NA coding upstream 290218 2799031 ~ 2827640 (+)
CI01000009_02713403_02713914 NA coding upstream 403860 2712958 ~ 2713998 (+)
CI01000009_02674026_02678655 NA coding upstream 439112 2673802 ~ 2678746 (+)
CI01000009_02667840_02668883 NA coding upstream 448694 2667442 ~ 2669164 (+)
CI01000009_03123137_03137452 CCDC80 coding downstream 3760 3122116 ~ 3138311 (+)
CI01000009_03145417_03159851 F5 coding downstream 27061 3145417 ~ 3159914 (+)
CI01000009_03164135_03169470 GPR161 coding downstream 43962 3162318 ~ 3170140 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S coding downstream 83851 3202207 ~ 3208984 (+)
CI01000009_03211734_03220047 NXPE3 coding downstream 93378 3211734 ~ 3222297 (+)
G51552 NA non-coding upstream 8946 3108463 ~ 3108912 (+)
G51553 NA non-coding upstream 9847 3107726 ~ 3108011 (+)
G51539 NA non-coding upstream 35448 3081929 ~ 3082410 (+)
G51537 NA non-coding upstream 41478 3076142 ~ 3076380 (+)
G51531 NA non-coding upstream 53426 3064200 ~ 3064432 (+)
G51559 NA non-coding downstream 437 3118793 ~ 3119020 (+)
G51610 NA non-coding downstream 1108 3119464 ~ 3149432 (+)
G51589 NA non-coding downstream 104403 3222759 ~ 3223865 (+)
G51581 NA non-coding downstream 142841 3261197 ~ 3262009 (+)
G51529 NA other upstream 55271 3062033 ~ 3062587 (+)
G51274 NA other upstream 767372 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 1216432 1897343 ~ 1919516 (+)
G51122 NA other upstream 1435892 1680146 ~ 1681966 (+)
CI01000009_01431700_01434463 NA other upstream 1679503 1429873 ~ 1435328 (+)
G53388 NA other downstream 2403886 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 2741946 5931718 ~ 5943899 (+)
G53651 NA other downstream 3127208 6245564 ~ 6248392 (+)
G56100 NA other downstream 6010944 9129300 ~ 9130286 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037988 NA non-coding NC_007120.7 CM002893.2 34069736 ~ 34083226 (-)