G130518 (pip4k2c,LOC107598997,LOC107664235,LOC107593957,LOC107714989)


Basic Information

Item Value
gene id G130518
gene name pip4k2c,LOC107598997,LOC107664235,LOC107593957,LOC107714989
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 9117170 ~ 9119782 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU176519
tgaaaatctttgaaaaatatatttggtcCAAACACTGATttgcaatataaataaaatgcaacaaTAAGGCATGAGATCCTAATCGAACTGAACAGCCTCTATTGTGTCTAAGCTACAAAATGTTCTCTTTTCAATCTTAAAGCTAAATTGCATAAAATGGCTAGAAAACATCCTGGACTCTGAACTCTCTAGGCATTTGTATGAATAATCAACATTCAAAATATTgctttatatatctatttttttcctttttctccccCCAAAAGACACCTAAATGTTGGCAGCCAGttgaattaataatattaattaataataataataataataataataataataataataataactggtCCTGGTGCAGCTTATAGAGAGCGACGCTGCTAAAAGCTCTGCACTAAAGACTACGGCAGAACTTCACGCGTTTGTTCTGTTTCACACTGATGATGGCAAGCTAAGGCATTTCCTCTCCTCCACTCTgaacgagagaaaaagagagagagagagagagagagagagagagagagaagctcacagggaggtgtagtgtgtgtgtgtggagctgctACATCTTCTTTTAAGTTTCTTTACAGATTACGCTGCGTCCCCTTCTTCATGTGTGTATTCACCCTCAACGagagatttatatatttagatatatatttagatacGATATTACAAGATGATTTCAGTCTCATCTTAGCCTAGTCACCAATAAATATGCACATTTACTTAACATTgatcagaatgtttttttaagcccatctttaaaaaaaaagtcttgtttTATCTAGTGTGCTTATGGAATCATGTcgtgtttttttcttgtaaaacatatatacaaaacCATCGCAGAGATACTGGAGCTGAGCAACGTGGGGAGAGACTCGGCTACGCAAAAATATTGGAGATGAAGTCTCGGAAACGTTTGGCGTATTGTTCTGGATGAACGGTGGATATTTCTGCACCGGCCCCGTGTTTCACTGTTTTCGCAGCGTGAGCAGCTTTCTTCTTGGTATCGTACTGCGTCAACACGTCTATAAGACCCATGAAGTACACCTCCCTCTGCGGCGCTCCGGCGCACTTTTCACGGCGTACACGTCCACGTACGGGTCGAACTCTCCGGGGCCCAGCGGCTTGAACGAGTTCATGTATCCGGCGATGCCCTCAGGAGACGTTCCGAACGAGCCGGCCTGCGGATTCAGACCGTTCTCAGCGTCTCCTTCATCCTCACAGCTCGGCTCCTCagcctcctcttcctcacgCTCAGCCCGGCCCACGTCATGGATCCCTAACAGCAGGCTGTAGTCCATTATCTTCAGCTTCACGAGAAACTACaacagaataaagagaatattgcagaaaaaaaaaaaatctatatgg

Function

symbol description
pip4k2c Enables 1-phosphatidylinositol-4-phosphate 5-kinase activity and identical protein binding activity. Involved in several processes, including 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process; negative regulation of 1-phosphatidylinositol-4-phosphate 5-kinase activity; and positive regulation of autophagosome assembly. Located in several cellular components, including autophagosome; cytosol; and nucleoplasm.

NR:

description
PREDICTED: phosphatidylinositol 5-phosphate 4-kinase type-2 gamma

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176519 True 1383 TUCP 0.41 3 9117170 9119782

Neighbor

gene id symbol gene type direction distance location
zbtb39 zbtb39 coding upstream 9885 9099492 ~ 9107285 (+)
LOC103022619 LOC108433387,LOC108275864 coding upstream 19871 9067252 ~ 9097299 (+)
LOC103023558 LOC108433383 coding upstream 99629 9002330 ~ 9017541 (+)
ube2j2 ube2j2,LOC108411519,LOC107697915,LOC107706988,LOC107599097,LOC107664234,LOC107593951 coding upstream 118433 8993811 ~ 8998737 (+)
LOC103023874 acap3,LOC107706985,LOC107664201,LOC107697914,LOC103359731 coding upstream 124082 8920681 ~ 8993088 (+)
LOC103043576 NA coding downstream 100852 9220634 ~ 9224711 (+)
csad csad,LOC107697858,LOC107599458,LOC107706996 coding downstream 110748 9230530 ~ 9242781 (+)
znf740 znf740 coding downstream 125690 9245472 ~ 9253071 (+)
cbx5 cbx5,LOC103047453,LOC107664188,LOC107707003,LOC107714996 coding downstream 202899 9322681 ~ 9332418 (+)
LOC111194074 calcoco1a,LOC108433409 coding downstream 498576 9618358 ~ 9645766 (+)
G130494 NA non-coding upstream 8485 9079596 ~ 9108685 (+)
G130497 NA non-coding upstream 62261 9051703 ~ 9054909 (+)
G130496 NA non-coding upstream 65801 9050835 ~ 9051369 (+)
G130505 NA non-coding upstream 72618 9044186 ~ 9044552 (+)
G130504 LOC108433385 non-coding upstream 73063 9042119 ~ 9044107 (+)
G130527 NA non-coding downstream 25708 9145490 ~ 9145843 (+)
G130495 NA non-coding downstream 41696 9161478 ~ 9166618 (+)
G130538 NA non-coding downstream 108717 9228499 ~ 9229092 (+)
G130547 NA non-coding downstream 148185 9267967 ~ 9338361 (+)
G130540 NA non-coding downstream 159653 9279435 ~ 9279813 (+)
LOC103024807 LOC108435578,LOC107565318,LOC107701248 other upstream 246341 8853689 ~ 8870829 (+)
cda LOC108416503,LOC108433378 other upstream 451351 8662743 ~ 8665819 (+)
G130413 NA other upstream 552595 8563650 ~ 8564575 (+)
LOC103037383 LOC103037383,LOC108432529 other upstream 1023116 8091731 ~ 8094054 (+)
lzic lzic,LOC107708836,LOC107681991,LOC107718820 other upstream 1508287 7601605 ~ 7608883 (+)
spryd3 spryd3,LOC107714925,LOC107664113 other downstream 12793 9132575 ~ 9193778 (+)
nfe2 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC100710772 other downstream 186372 9306154 ~ 9322080 (+)
G130844 NA other downstream 637170 9756952 ~ 9757351 (+)
LOC111194075 tuba1b,LOC107697946,LOC103148207,LOC105941124,LOC107707017,LOC107715008,LOC107557552 other downstream 736624 9856406 ~ 9871772 (+)
mlh3 mlh3,LOC107591079 other downstream 791525 9911307 ~ 9920995 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G13726 NA non-coding CI01000001 null 1981627 ~ 1983612 (+)