G85477


Basic Information

Item Value
gene id G85477
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 11252713 ~ 11253238 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU97270
TTTTTTTAGAGTGTGCCTGAAAAGTGTATCTGATTTCATCAGTCAGTCCTAAAGACTGGATTTGTGTGCAGTGTGAACAAAGCCAATTCGATTGCAGCCCCTCCCAAACTCACAGCGCACCCATGTGATTAGATGCTGGCAGTGATGTGGGAGGGGCTTAGGATAGTGCTACAAAAATGGCATGGAGCAAACACCCACTCCACCAATGATAGATTTAGGAAATAGTGGGATTATTTAAAGCTGAAGTGTGTCATTTTTGTGCCAATCAGAAACTGCAAAAATAATTATTGCATTCAAATTGTTTCCAAATGTGACACTGGTTGTACAAACACTGCCAATGTTGGTGTGTCAGATTGGTTGGGATGCTCAAATGAACAGAGCAATATTTTGAGGGTAATATTAAGCTGGGAAAGGAGAATGTATTTTAAAGGGATAGTTCACCCAAAAATGAAAATTTTGTCATCATTTACTCACCCTCAAGTTGTTTCAAACCTGTATACATTTCTTTGTTCTGCTCAACACAAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU97270 True 526 lncRNA 0.39 1 11252713 11253238

Neighbor

gene id symbol gene type direction distance location
CI01000013_10892125_10899628 ARSA coding downstream 353085 10891714 ~ 10899628 (-)
CI01000013_10843295_10852581 CHKB coding downstream 400132 10843160 ~ 10852581 (-)
CI01000013_10838711_10841053 NA coding downstream 411149 10838497 ~ 10841564 (-)
CI01000013_10828622_10836409 CPT1, CPT1B coding downstream 415567 10828531 ~ 10837146 (-)
CI01000013_10799938_10806858 PRPF18 coding downstream 445855 10798598 ~ 10806858 (-)
CI01000013_11262983_11266454 RABL2B coding upstream 9237 11262475 ~ 11266454 (-)
CI01000013_11276658_11278225 NA coding upstream 23396 11276634 ~ 11278730 (-)
CI01000013_11280259_11284882 NA coding upstream 26946 11280184 ~ 11284882 (-)
CI01000013_11308893_11311699 ARF4A, ARF5, ARF4 coding upstream 54557 11307795 ~ 11311699 (-)
CI01000013_11343431_11351259 NA coding upstream 89335 11342573 ~ 11351811 (-)
G85529 NA non-coding downstream 43453 11205942 ~ 11209260 (-)
G85502 NA non-coding downstream 98404 11154079 ~ 11154309 (-)
G85501 NA non-coding downstream 99389 11152959 ~ 11153324 (-)
G85500 NA non-coding downstream 100577 11151868 ~ 11152136 (-)
G85499 NA non-coding downstream 101086 11151397 ~ 11151627 (-)
G85466 NA non-coding upstream 3793 11257031 ~ 11258272 (-)
G85446 NA non-coding upstream 34182 11287420 ~ 11290002 (-)
G85443 NA non-coding upstream 37055 11290293 ~ 11291186 (-)
G85444 NA non-coding upstream 38629 11291867 ~ 11293033 (-)
G85445 NA non-coding upstream 47384 11300622 ~ 11303584 (-)
G85401 NA other downstream 217247 11035032 ~ 11035466 (-)
G85188 NA other downstream 657376 10592204 ~ 10595337 (-)
CI01000013_10564288_10569141 NA other downstream 680273 10563459 ~ 10569290 (-)
G85170 NA other downstream 772013 10479861 ~ 10480700 (-)
CI01000013_09309438_09335834 MICAL3A other downstream 1929869 9307036 ~ 9336077 (-)
CI01000013_11596784_11604320 NA other upstream 345822 11596688 ~ 11604865 (-)

Expression


Co-expression Network