G85446


Basic Information

Item Value
gene id G85446
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 11287420 ~ 11290002 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU97239
ATGAAGAACCATTTCCGCATTAACTGCTCTACGCTGCTCTGAAGCTTAAACAAATCAATCAGAATGATCTTTTCCGAGGGGAGTGATGAAGAGGATGATGATGATGATGATGAAGAAGATGATGGAGGTGCTGGAGTAAGTGTCTGCTGCCAAGGGTAGACAACTGCTCCAGACCTTGATGCAGCGTGTCGAGAAAGACCCAATAGTACGCTGGATCCATGAACTGTGTGTATTTGCTGACACAAGCAAGCAGCAGCCAAAGAAACACACAGCTTCTTTTGTGATAAATGTCACAACCCAAGCACCTCCCGCGCCATGTGTGTCCATGGCAAACCTGACACGTAGACCATGATTCCTCCATGGGAACGATGGACCTCGCAACTTTCCCGCTGTTCAGTGGCAGCACCATCGGTTTTCTTCAGAACGGCTCTGTTTTTGTGTCTGTTTGTGCAACCCTGAAGAAACCATGGAGAGAAGAATGAAATATACATGGAGAGGTGATGACCTCATGAGTAAAGAGCTGCTGTTCCAGAGGTTGGAAGATGTGAGCCAGTTATTTCTGTCATCACAATCGTCCTCAATCACCATTGTGCCATCGAGCAATGCACATGACTCCAAGTTATTTCAGCAGGACTGACTGTTTTTTGCAACAGGTCTACAGTAGTCAACCATCCATTAAAATACAAACAGAGATGGGCTGGATGGGCATTTTGAAAATGTACTAATGGATGCATGTTGCTCACATTTATTTATTGGGAGGTCAATGCCCCTTTGAAGCCCAGGTGTATTTGTTGTAAGGATATATTCAGACTATGGCTGCTTGGTCCAAAGCTCTCCAGTATAACTATAGCAGAAGGTTTCTGGAGCAGCGGATCAGGGTCAGAGGTAAAAGCCCACTGTTTTATGTTTTTTTTTTTTTTCTTTTGAATTCTTTTATCTCACTTGATGCCACGTCAACGCCACTCGGCTATAGAGAGCATGCTCAGAGCGAGATGACATGTTCACCAGGATAGGGTTCACAGGCACAACGGTTCTGCACGTCGAGCTGACTTAGTTGAATCCGCTGGTTCAGATACTTTACTAACACTACACAAAATGACACACTGCTAAATCTCACGCACAGGTTTTATTGCAGTGCTGTTGAACAAAAGTTACACAACAAATGTAACGTACCTGTAATGAGAAATGATCTCATACAGAACATGGTCCGAATAAAAGGACCTGGTCTAGCCAGAAATGAAGCCCAATAGATGTCATACAACATCAGAGGCACTCATATCCTATTGAGCACTCATAAATTCTTGGTTATGTGGCAAAGGGATCATTAGCAGGTGATATATTTAGTTTTTACAATGATGTTTTTTAGAATGTCATGATTGCAGATGGATTTCTGTGCATATGTCTGCCTGAATGCATCACTTTCTAATGAGCTACACGTCTAACTTCCCCTAAATAAAGAATGTTGTGAAAAAAATATAGGTCTATTTTGTGTTTGTGTGTGTGTGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU97239 True 1507 lncRNA 0.43 2 11287420 11290002

Neighbor

gene id symbol gene type direction distance location
CI01000013_11280259_11284882 NA coding downstream 2538 11280184 ~ 11284882 (-)
CI01000013_11276658_11278225 NA coding downstream 8690 11276634 ~ 11278730 (-)
CI01000013_11262983_11266454 RABL2B coding downstream 20966 11262475 ~ 11266454 (-)
CI01000013_10892125_10899628 ARSA coding downstream 387792 10891714 ~ 10899628 (-)
CI01000013_10843295_10852581 CHKB coding downstream 434839 10843160 ~ 10852581 (-)
CI01000013_11308893_11311699 ARF4A, ARF5, ARF4 coding upstream 17793 11307795 ~ 11311699 (-)
CI01000013_11343431_11351259 NA coding upstream 52571 11342573 ~ 11351811 (-)
CI01000013_11368665_11383592 NA coding upstream 78565 11368567 ~ 11383592 (-)
CI01000013_11422924_11427360 SYT1 coding upstream 132717 11422719 ~ 11427360 (-)
CI01000013_11438137_11444770 NA coding upstream 148063 11438065 ~ 11445168 (-)
G85466 NA non-coding downstream 29148 11257031 ~ 11258272 (-)
G85477 NA non-coding downstream 34182 11252713 ~ 11253238 (-)
G85529 NA non-coding downstream 78160 11205942 ~ 11209260 (-)
G85502 NA non-coding downstream 133111 11154079 ~ 11154309 (-)
G85501 NA non-coding downstream 134096 11152959 ~ 11153324 (-)
G85443 NA non-coding upstream 291 11290293 ~ 11291186 (-)
G85444 NA non-coding upstream 1865 11291867 ~ 11293033 (-)
G85445 NA non-coding upstream 10620 11300622 ~ 11303584 (-)
G85557 NA non-coding upstream 23771 11313773 ~ 11313985 (-)
G85569 NA non-coding upstream 123641 11413643 ~ 11415350 (-)
G85401 NA other downstream 251954 11035032 ~ 11035466 (-)
G85188 NA other downstream 692083 10592204 ~ 10595337 (-)
CI01000013_10564288_10569141 NA other downstream 714980 10563459 ~ 10569290 (-)
G85170 NA other downstream 806720 10479861 ~ 10480700 (-)
CI01000013_09309438_09335834 MICAL3A other downstream 1964576 9307036 ~ 9336077 (-)
CI01000013_11596784_11604320 NA other upstream 309058 11596688 ~ 11604865 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G166254 NA unknown CI01000032 null 1629025 ~ 1632824 (-)