Gene
RNA
| Item | Value |
|---|---|
| gene id | G85466 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 11257031 ~ 11258272 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU97259 | True | 1242 | lncRNA | 0.39 | 1 | 11257031 | 11258272 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000013_10892125_10899628 | ARSA | coding | downstream | 357403 | 10891714 ~ 10899628 (-) |
| CI01000013_10843295_10852581 | CHKB | coding | downstream | 404450 | 10843160 ~ 10852581 (-) |
| CI01000013_10838711_10841053 | NA | coding | downstream | 415467 | 10838497 ~ 10841564 (-) |
| CI01000013_10828622_10836409 | CPT1, CPT1B | coding | downstream | 419885 | 10828531 ~ 10837146 (-) |
| CI01000013_10799938_10806858 | PRPF18 | coding | downstream | 450173 | 10798598 ~ 10806858 (-) |
| CI01000013_11262983_11266454 | RABL2B | coding | upstream | 4203 | 11262475 ~ 11266454 (-) |
| CI01000013_11276658_11278225 | NA | coding | upstream | 18362 | 11276634 ~ 11278730 (-) |
| CI01000013_11280259_11284882 | NA | coding | upstream | 21912 | 11280184 ~ 11284882 (-) |
| CI01000013_11308893_11311699 | ARF4A, ARF5, ARF4 | coding | upstream | 49523 | 11307795 ~ 11311699 (-) |
| CI01000013_11343431_11351259 | NA | coding | upstream | 84301 | 11342573 ~ 11351811 (-) |
| G85477 | NA | non-coding | downstream | 3793 | 11252713 ~ 11253238 (-) |
| G85529 | NA | non-coding | downstream | 47771 | 11205942 ~ 11209260 (-) |
| G85502 | NA | non-coding | downstream | 102722 | 11154079 ~ 11154309 (-) |
| G85501 | NA | non-coding | downstream | 103707 | 11152959 ~ 11153324 (-) |
| G85500 | NA | non-coding | downstream | 104895 | 11151868 ~ 11152136 (-) |
| G85446 | NA | non-coding | upstream | 29148 | 11287420 ~ 11290002 (-) |
| G85443 | NA | non-coding | upstream | 32021 | 11290293 ~ 11291186 (-) |
| G85444 | NA | non-coding | upstream | 33595 | 11291867 ~ 11293033 (-) |
| G85445 | NA | non-coding | upstream | 42350 | 11300622 ~ 11303584 (-) |
| G85557 | NA | non-coding | upstream | 55501 | 11313773 ~ 11313985 (-) |
| G85401 | NA | other | downstream | 221565 | 11035032 ~ 11035466 (-) |
| G85188 | NA | other | downstream | 661694 | 10592204 ~ 10595337 (-) |
| CI01000013_10564288_10569141 | NA | other | downstream | 684591 | 10563459 ~ 10569290 (-) |
| G85170 | NA | other | downstream | 776331 | 10479861 ~ 10480700 (-) |
| CI01000013_09309438_09335834 | MICAL3A | other | downstream | 1934187 | 9307036 ~ 9336077 (-) |
| CI01000013_11596784_11604320 | NA | other | upstream | 340788 | 11596688 ~ 11604865 (-) |
