G142491


Basic Information

Item Value
gene id G142491
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 7948341 ~ 7948477 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU161926
CTGACATAATCGCTCTGAGCTGTTTTAGCGATTCCAGATACAGCGGGGCTTCTTCCCTCCTTCCCTGTGCTTCCTCAAAACTCCAGCATATAAAAAAGGTCGTCGACTAACCAGATTCAAACCAGCATCCATCTTTTGTTCTGAACTTCTGGAAATCATTCAGGGCATTATGTATACATTTGGTGGAATTCCTCTTCTTGTGGTGGTGTGGTGTGGACTAGCTCACACTCTGGACAATCTCTCACTGGATGAAGCATGGGAGAGCTGGAAAATCACCCATAGGAGGGAATACAANNNNNNGGATGAAGAGTCTATTTGACGGGCGATTTGGGAGAAGAACATGCTGTAACATAACAAAGAGTATGAACTGGGGATTCATACCTATAATCTGGGCATGAACCATTTTGGAGATATGACACTAGAAGAAGTGGCAGAGAAAGTGATGGGACTCCAAATGCCCATGTACCGGGACCCAATAAACACATACATGCCTGGTGACACAGTGGAGAAGTTGCCCTAATCAACTGATTACCGTAAACTGGGATACGTCACTTCTGTCAAGAACCAAGGTTCGTGCGGCTCATGCTGGGCCTTTAGCTCTGTTGGGGCCTTAGAAGGTCAGCTGAAGAAGACCAAAGGTCAACTGGTGGATCTCAGTCCTCAGAACCTGGTGGACTGTGTGACTGGAAATGACGGCTGCGGTGGAGGATACATGACAATTGCCTTCCAATATGTCGCAGACAACCAAGGCATTGATTCAGAGGAGGGCAACCCTTATGTTGGAATGGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161926 True 137 lncRNA 0.46 1 7948341 7948477

Neighbor

gene id symbol gene type direction distance location
CI01000027_07932282_07935282 NA coding upstream 12315 7931927 ~ 7935342 (+)
CI01000027_07843550_07849059 HAPLN2 coding upstream 98523 7842846 ~ 7849134 (+)
CI01000027_07789066_07797594 NA coding upstream 150057 7784774 ~ 7800723 (+)
CI01000027_07695223_07701346 NA coding upstream 245834 7695046 ~ 7701823 (+)
CI01000027_07686575_07690215 GPATCH4 coding upstream 257310 7686575 ~ 7690347 (+)
CI01000027_08026500_08029412 ENSAB, ENSA coding downstream 42936 8025788 ~ 8032041 (+)
CI01000027_08033124_08037571 NA coding downstream 50119 8032971 ~ 8039234 (+)
CI01000027_08052743_08058881 VPS72 coding downstream 69826 8052678 ~ 8059107 (+)
CI01000027_08064283_08072145 TMOD4 coding downstream 78832 8061684 ~ 8072249 (+)
CI01000027_08078236_08079316 LYSMD1 coding downstream 95384 8078236 ~ 8079950 (+)
G142466 NA non-coding upstream 27676 7908571 ~ 7919981 (+)
G142526 NA non-coding upstream 32014 7915324 ~ 7915643 (+)
G142465 NA non-coding upstream 40022 7830992 ~ 7907635 (+)
G142475 NA non-coding upstream 87041 7859247 ~ 7860616 (+)
G142467 NA non-coding upstream 94451 7846622 ~ 7853206 (+)
G142546 NA non-coding downstream 6267 7989119 ~ 7989331 (+)
CI01000027_07981813_07992141 NA non-coding downstream 7917 7981637 ~ 7992272 (+)
G142549 NA non-coding downstream 18672 8001524 ~ 8001756 (+)
G142550 NA non-coding downstream 19204 8002056 ~ 8002354 (+)
G142516 NA non-coding downstream 20338 8003190 ~ 8006260 (+)
CI01000027_07469157_07471720 NA other upstream 475943 7468964 ~ 7471999 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other upstream 989890 6951132 ~ 6957767 (+)
G141082 NA other upstream 1046734 6898411 ~ 6900923 (+)
CI01000027_06706050_06708485 NA other upstream 1237025 6705983 ~ 6708513 (+)
G141052 NA other upstream 1676057 6271367 ~ 6271600 (+)
CI01000027_08255251_08264629 NA other downstream 275485 8255073 ~ 8264897 (+)
G143033 NA other downstream 1745963 9728815 ~ 9729551 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010009 ctsk coding NC_007127.7 CM002900.2 29492749 ~ 29502787 (+)
grasscarp (Ctenopharyngodon idella) G11053 NA non-coding CI01000000 null 17055911 ~ 17056150 (+)
striped catfish (Pangasianodon hypophthalmus) G10268 catk,LOC108441922 non-coding NC_047595.1 CM018541.1 18757014 ~ 18760468 (+)