CI01000029_02502175_02516608 (CLVS2)


Basic Information

Item Value
gene id CI01000029_02502175_02516608
gene name CLVS2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2502156 ~ 2517380 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_02502175_02516608.mRNA
AAACCTTTATTTAGTGAGTCTCGGGAGGATACAGAGCGAACGCTCTCCCCTCCTCCGCCATGTGATGACGGACAGACTGTATCACCGGAGCGATGCTTGAAGTCACTCTCATCAGCAACAAAGCGAAGCAACAGCAGCAGCAGCACTGACGTAAACCATCCACCACATCACCGGAACCATACGGACCAGGACCGACACCATATCGTCTCTTCCGAAGGACGTATAGGATGAAAACGGAGCGCTGAGAGAGACTTGGGATCGTGATGATGCTCGGACTCCAATTCACGGCAACATTTGAAATGCGCGTTAAATGGAGACTCATGACAAGAGATGCTGCAGGGTGCCGCATTGCCTGGCCGCTTGATGATGGTAGGATAGAGCAGCGCTTTTAACCGTGATGCTCGTTCTTAGATGCTTTTGGGGTGGGATGGAATGAATGAACGGATTTTGTGGTCGAGTCCTTGCCTCAGATTTGATCATACGCAAACTAAGACGATTTCAGCCTGCTTAAGCCATAGACATATACAATCGATGAGCACGACCAGATGAATGTATGTGAATTAAAAAACCCACGATACAGGTGAACTCATAAGGTGAACTAACAGTGTCGTAGCTTACACTCAGGACCATCTCCAAAGTCAGGGTTTATTTGAAAGCACTGCAGTGACAGGGCTCTTTATGATTGGCATTTTCATAATCAATTACATAGAGCATATTTAGTGTAGTATATACGGTAGTACAGTATAGTCAGCCTTGGTCCATTGCAAGGACAATGACTCATTTACAGGCAGGCCTGTCTCCAGAAACCCTGGAGAAAGCCAAGGTGGAGTTAAAGGAGAACCCCGATACTTTGCATCAGGACATACAGGAGGTGAGGGACATGATCATCACCCGTCCAGACATTGGCTTTCTCAGGACAGATGATGCTTTCATCCTGCGCTTTCTCAGAGCCCGGAAATTTAACCATTTCGAGGCCTTCCGCCTCCTGGCCCAGTACTTTGAGTACCGGCAACAGAACCTAGATATGTTCAAGAACCTGAAGGCCACCGATCCGGGGATCAAGCAGGCTCTGAAGGACGGATTTCCTGGGGTTCTGTCCAATTTGGATAGATACGGGAGGAAGATTCTGGTTCTGTTCGCAGCGAACTGGGATCAGAGCAGGTACACTTTTGTGGATATTCTGCGGGCTATTTTACTTTCTCTGGAGGCAATGATCGAAGACCCCGAGCTACAAGTAAATGGATTTGTCTTGATCATTGACTGGAGTAACTTCACTTTCAAGCAAGCTTCCAAGCTAACTCCAAGCATGCTGAGACTGGCAATCGAAGGCCTGCAGGTAACACAACTATTTGATTTTAATCTTATAGTTATATTTATACAGAGAATCAACATGGATATTACAAAAGCATTCTTCAAATTTGTGCCTTCATGCATCTTTGATTCATCAATGCTTCAGACGATGTATTATGATATCCAATATGTCATGTTTGTGAAGCGTGCATCAGTCTTGAGAAATAACCCACGCTTGGCAGCCAATCACAATGGGCCAATCTTCCCCAGCCCACCCCATGCCGAGTTTCCCTGGCAACCTGTCCAACCGCCATGCAATGCACCCTCCAGATGGGCTGTGCTCACAGAAAGAGACGCACTCATGTCACTCAGCCATCGTGTCCCTGAGACCTTTATCTCACTCGGTAGCAGCGGGTCCCAGAGCAGAGATATCATCGCATGTGATGACACCACCTGCTGGCAAATGCCTCATAGCCCCTCCTCTGAAGCTCTGGCCAATCACCATGTGCTTGCGCCATCACCTGCCTCTGTGTCAGATCCAGTGCCAGACCTAACACCCACAAGCCTGTGGTCTGCTGCTGGACGCTGGCCTGGGGGCTTCTGTGTCTATACGGCCTGCATACTTGCAGCTGTCCACCATCGGCGTTACGCCAGTGGCGCCAACAACACCGTTCGGATATGAATCAATGAGAAGCAATAAA

Function

symbol description
clvs2 Predicted to enable phosphatidylinositol-3,5-bisphosphate binding activity. Predicted to be involved in lysosome organization. Predicted to be located in Golgi apparatus and early endosome membrane. Predicted to be active in clathrin-coated vesicle; endosome; and trans-Golgi network. Orthologous to human CLVS2 (clavesin 2).

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_02502175_02516608.mRNA True 1991 mRNA 0.48 4 2502156 2517380

Neighbor

gene id symbol gene type direction distance location
CI01000029_02359382_02359992 NA coding downstream 142164 2359013 ~ 2359992 (-)
CI01000029_02254888_02257580 NA coding downstream 244576 2254877 ~ 2257580 (-)
CI01000029_02231187_02248416 NA coding downstream 252665 2231187 ~ 2249491 (-)
CI01000029_02203122_02221481 TPD52L1 coding downstream 280675 2202780 ~ 2221481 (-)
CI01000029_02159023_02164894 NA coding downstream 337028 2158837 ~ 2165128 (-)
CI01000029_02532272_02537205 SMPDL3A coding upstream 14820 2532200 ~ 2537205 (-)
CI01000029_02539755_02540836 FABP7B, FABP7 coding upstream 22349 2539729 ~ 2542444 (-)
CI01000029_02589994_02592379 NA coding upstream 71070 2587549 ~ 2592379 (-)
CI01000029_02593889_02603627 HSF2 coding upstream 76011 2593391 ~ 2603627 (-)
CI01000029_02738375_02739517 GJA1, CX43 coding upstream 220674 2738054 ~ 2740239 (-)
G153124 NA non-coding downstream 10810 2490240 ~ 2491346 (-)
G153166 NA non-coding downstream 50690 2450954 ~ 2451466 (-)
G153165 NA non-coding downstream 53289 2448537 ~ 2448867 (-)
G153164 NA non-coding downstream 54314 2447615 ~ 2447842 (-)
G153163 NA non-coding downstream 54566 2447130 ~ 2447590 (-)
G153175 NA non-coding upstream 90891 2608271 ~ 2608590 (-)
G153176 NA non-coding upstream 94577 2611957 ~ 2612187 (-)
G153178 NA non-coding upstream 99373 2616753 ~ 2616955 (-)
CI01000029_01293143_01293964 BATF3 other downstream 1208033 1292249 ~ 1294123 (-)
G153891 NA other upstream 731397 3248777 ~ 3286554 (-)
CI01000029_03698769_03707177 NA other upstream 1188843 3698572 ~ 3707883 (-)
CI01000029_04460778_04463540 FKBP1B other upstream 1942963 4460159 ~ 4463540 (-)
G154415 NA other upstream 2468728 4986108 ~ 4990990 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018310 clvs2 coding NC_007131.7 CM002904.2 40269891 ~ 40319890 (-)
bowfin (Amia calva) AMCG00004316 clvs2,LOC107675233,LOC107675107 coding CM030121.1 CM030121.1 42640409 ~ 42660607 (-)