G185101


Basic Information

Item Value
gene id G185101
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 2979373 ~ 2983138 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU210208
GCACTCTTATGTTCAACTATCTGCATTTAATATCAATTAAAACTATAATATATTTTCATTTAATTATAAATAATATGCAATTAATTGTACACAAACATAACATTCAGTTCACACTTAAGTATATTATTTTAAAATATATAATTCCGTAATAAGTACGCTTTTTTAAAAGTATGCTAAAGCGTACTTCTTCACAAGGGAGATCAATATATTATCATTTGATTAGATTGTAAAGTCCGAGATTGAAATTAATGGCATTATGATTATAACTCAGTGAAAATCCAGTGAAATTTTGTGCTTATATTTAGCCACAGCGAGATAAAGTAAGCGTTAAAAGTTGTCTCATCCATTTAAAGGGGCATTTACACTAGCAGTGGTTTATATTAAACATCAAATATGGACTGTTATTGTGCTGCGTGTAGCATTTGCACATTCATTGTGAACAGAAAAATTACTATCACTAGAAACTAGGCCTTTTTCACACTACATACAAAAGCAGTGTAAAATCCCCACAAATCCAACGTTACAGTATTCACACTGGCCCAAAAATAATAAAAAAAAAAACTTTTTATTAACACAATCTTATGTAATGTAGACTTTTATAAAGCAGCATCTGAAACTTTCAAGCTTTGTCCCATTCCCACCTTCAAAAGCCCCGTAGGAAGAGGTCTACGCTTATTTTTTCAGTCCCAGTTCGGTCTCTATAGGCCATTTTTTTCCAATTTCCACACACACAACGCTTCAGATCTCCAGTTACAGATTTCTGCATGCTGTTATTAATTATATTTTGCAGGAGCCCAGGAGTCATTTCTTTTTCCCACTTTCCATGCACATATCAGTATCAAAACTATTCAAAACTTGTCCCGCTCCGCACTCTGTTGCTTCAGGTCCTGCGAATCAACCTCTATTCCATATAACTATATGGATATAAATATGGTCCCCCTCCTCATGTAAAACAGATTTCAAGATGATCAAGCTTGTAAAAGCTCTTAATGGCATCGTCTCATAAACCATTTTATAATTTATGGCCATTATTAGAGTAAATGTTCAATGTAGTAACTCAGAAATGACTTTACTTTTTTGTATAAAGCCGCAGCTATGCAGCAGAAATGCTGTTGGTGTGAAGCAGCACAAGCCTGCTGTCGCTTTGCTCACATGCTGCTTGTGCATGCGGCGTGAAACAGGCCTCAGAGTTAAACCATGGGATGCAGCATCTACTGTTCATTTAAAAATGCCGTGCCCATAACACAGGTTTCTTGATTCAGAGATTCATCTCGCATCTCTCAAAGATACAGCTCTCAGCAGTTTCACATCGGCACCTTTTTCAATATTCTGCAATATTCTTGTTACTGTCAAAAAATAATAGGAAAATGGCCAGTATCTTTTGTTCTCTTAAATTATCTTGTTTTCATCAGATTGGATGGGATAGTCTGATTCCCCTTTCTATTTTAAATGAAAAGCTCAAATATTGCTTTTATTATAATCCGCAGCAAGCTGTAGCTTGAGATCAGTGTTATGCTAGTGTTTGATATTTTTATTGATTATTCATAAAGCCATAGCATTTTAGTGCACTTTTTCTGTTTCACAACTACCAATAATTTCAATTTCAACTAAATAAACATTTCCACTAATGAACTGAGCAAAGCCAGGGTCAGAAATTAGCCAAGGGTTAGGGTACAAATACCAGCGAAAGTAATAAAAATGCAACAGATATTCAAAATGTGGTGATACCTTTGTTTGCTGTTATTTAATATTTGATATATTTCATAATATTCTAATATAGGCCTTAGACATAAATGAAGACTATGCTGTTTGATGTACATCTGAAAAATATAAAAAGGTAAAAAAAAAAAAATCCTTTAAAAATCCATTCCAGGGTTCCAGTATCCAGGGTTCCAAAAACTCATTCCAATCCATTATCCAGTGATAATGCAAAATAAAAAAAGACACTGTAGCAAGCAGAAAAAATAAAACACCTGCTTATAATGTCACATGGTCTATTTTTTTTTTTTTTTTTAATTAATAAGTTTAAATAAAATAAACTGATAGTTTAAATAAAGATGCTACATTCAAAAATCCCAGAAGTGTGTATGTACTTACTATTGAGAATAGAGAATTTTGTTTTTATATTGTAAAAATAAACTATATTATAAAGAAAATATGCATTAAATCTACACTGTAAATATTCTTCAAATTCAAACACGATGAAAAATCTTTTATCATTGTACCCAGCACAGTCTTCAGAACTATTTTACGTTTTGGCAAATTGGTGGCGAATTTGTATGATCTCATTTGTGCATTTCTGTACAATCTTCTTACGCCTTAGACGGATATGTTTAGGGGTGGAGCTACAAAAGCATACTTTTTTTTCTAAAAGTCTAACATTGTACAAATTCATACAAAATCGCCACCTCGTAAAATACTAAATTTTTTCAGTGAGGTCAGATTGTTGTACCCATTAAAGAATACTGTATATGACATATGTAAAAGGTCTTATTTAATGAATCGTAATGGTGTGTTTTAAAGTTTACGGTAACACTTTACAAAAAGGTCCCATTAGTTAACATTAGTTAATGCATTAAGTAACATTAACTAACAATGAGTAATACATTTGTTATAGTATTTATTAATCTTTGTTAACATTAGTTCATTGTTTGTTCATGTTGAAATATGTGACTTTTGACTTTAATAATGTATTAGTAAATGTTGAAATTAACATAAACTAAGATTAATAAATTTAGTCCATGTTAACTAATGTAGTTAACTAATGTTAACTTATGGACCCTTATTGTAAACTGTTATCAAATTTACTCTGTATTTTCACAAGCACACAGAGGAATGAAAGAGATGTTTAGAATTTTGAATGTTATTGATGTGTCATTATGAACAATGAAAACTGCATCAAAATGCAGGCTCTGTTGACTTTTAGCTCATTGCTTTTATTTGTTCATGAAAATTCAGTGACAATACATGCAAATTTACTAGCTTATTGTTATTTCAAGTCAAACTGAAGCGTGAAAGCAGGTTGCTGAGTCTTAAAACAAAGAAAATCTGATGGTACCAAGCAACTTTTTGAAATAGGCTAGCAAGAAAATGCACTTGGCACATATTTTGTGAGATATTGCGTCTGTTTCCACTCCTTTCAGATGTTGACACACTCATGGCCCGCTCTCCCGCCAGGCAGACCTGTTTAAAATGTTGCCTGGCGTATCAACAGCTACACCCCCCATTGTTTGGTCCTTGTTATGTTTTGTTTTTAACCCACATAAAAATCAACCGCATAAGACTGACAAAACCGTACGTCTGAGAATAAAACCAATAAATGAATGCATTAAAATGCTCATTTGAAAACTTGCAGAGCACACCACAAGAAGGTTGTTTGGTGTCGTTTTGACTTCAAAAAGGTCCAGATGATTGTGCGCATGCCAGTGTATGAAATATTGCAAATGTTTGTCTGTTTGTGATGATGTTAAAACATACCAAAAACACAGGGAAAAAAGGTAAAGCACAAAGTGTGGGTTGTGTCTGCTAATGTTTGCCACAAATGTACTGTATATTGTTATGTATAAAAGAGAGCATCATCTGAGATGTCTTTAGATACAAGCATAGAGGAT
>TU210209
TAGTAAATGTTGAAATTAACATAAACTAAGATTAATAAATTTAGTCCATGTTAACTAATGTAGTTAACTAATGTTAACTTATGGACCCTTATTGTAAACTGTTATCAAATTTACTCTGTATTTTCACAAGCACACAGAGGAATGAAAGAGATGTTTAGAATTTTGAATGTTATTGATGTGTCATTATGAACAATGAAAACTGCATCAAAATGCAGGCTCTGTTGACTTTTAGCTCATTGCTTTTATTTGTTCATGAAAATTCAGTGACAATACATGCAAATTTACTAGCTTATTGTTATTTCAAGTCAAACTGAAGCGTGAAAGCAGGTTGCTGAGTCTTAAAACAAAGAAAATCTGATGGTACCAAGCAACTTTTTGAAATAGGCTAGCAAGAAAATGCACTTGGCACATATTTTGTGAGATATTGCGTCTGTTTCCACTCCTTTCAGATGTTGACACACTCATGGCCCGCTCTCCCGCCAGGCAGACCTGTTTAAAATGTTGCCTGGCGTATCAACAGCTACACCCCCCATTGTTTGGTCCTTGTTATGTTTTGTTTTTAACCCACATAAAAATCAACCGCATAAGACTGACAAAACCGTACGTCTGAGAATAAAACCAATAAATGAATGCATTAAAATGCTCATTTGAAAACTTGCAGAGCACACCACAAGAAGGTTGTTTGGTGTCGTTTTGACTTCAAAAAGGTCCAGATGATTGTGCGCATGCCAGTGTATGAAATATTGCAAATGTTTGTCTGTTTGTGATGATGTTAAAACATACCAAAAACACAGGGAAAAAAGGTAAAGCACAAAGTGTGGGTTGTGTCTGCTAATGTTTGCCACAAATGTACTGTATATTGTTATGTATAAAAGAGAGCATCATCTGAGATGTCTTTAGATACAAGCATAGAGGATTTAAAAATGTACAAGTACATTAAATAAAATTCTATAGAAACACTGTTTTGCCTGTGGTGCTGAGATATTAAATGAATGATGTAAAGCATCTGGCTTGGAATTAATACTTTCTGAAAAGTCATATAGCAAAGGATTGGAATTAAAACAATTGAAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU210208 False 3611 lncRNA 0.33 1 2979373 2982983
TU210209 True 1072 lncRNA 0.34 1 2982067 2983138

Neighbor

gene id symbol gene type direction distance location
CI01000040_02975088_02975548 NA coding upstream 3427 2975088 ~ 2975946 (+)
CI01000040_02889343_02891410 KCTD16B, KCTD16 coding upstream 87934 2889343 ~ 2891439 (+)
CI01000040_02650575_02692600 NA coding upstream 286702 2649543 ~ 2692671 (+)
CI01000040_02609749_02611069 ARHGAP26 coding upstream 368138 2609749 ~ 2611235 (+)
CI01000040_02602517_02603172 NA coding upstream 375750 2602357 ~ 2603623 (+)
CI01000040_03168337_03198400 RBM27 coding downstream 185199 3168337 ~ 3198400 (+)
CI01000040_03212701_03215022 POU4F3 coding downstream 229563 3212701 ~ 3215168 (+)
CI01000040_03271519_03276006 NA coding downstream 287925 3271063 ~ 3276040 (+)
CI01000040_03297317_03298657 DRD1B, DRD1 coding downstream 313317 3296455 ~ 3298896 (+)
CI01000040_03761247_03762668 BOD1, FA44B coding downstream 778023 3761161 ~ 3762674 (+)
G185103 NA non-coding upstream 1469 2977121 ~ 2977904 (+)
G185124 NA non-coding upstream 91698 2887451 ~ 2887675 (+)
G185121 NA non-coding upstream 116605 2862239 ~ 2862768 (+)
G185056 NA non-coding upstream 125869 2849039 ~ 2853504 (+)
G185116 NA non-coding upstream 130556 2848552 ~ 2848817 (+)
G185135 NA non-coding downstream 24001 3007139 ~ 3007341 (+)
G185140 NA non-coding downstream 32768 3015906 ~ 3016163 (+)
G185154 NA non-coding downstream 47524 3030662 ~ 3030875 (+)
G185163 NA non-coding downstream 55649 3038787 ~ 3039010 (+)
G185171 NA non-coding downstream 62302 3045440 ~ 3045808 (+)
G184003 NA other upstream 1742884 1230292 ~ 1236489 (+)
CI01000040_00977184_00977458 NDUA2, NDUFA2 other upstream 2001210 977184 ~ 978163 (+)
CI01000040_00240852_00305487 GABRB2 other upstream 2702518 240849 ~ 313275 (+)
G183420 NA other upstream 2814451 157543 ~ 164922 (+)
G183366 NA other upstream 2918976 53691 ~ 60397 (+)
G185296 NA other downstream 350440 3333578 ~ 3333983 (+)
G185884 NA other downstream 755849 3738987 ~ 3739281 (+)
G185947 NA other downstream 990627 3973765 ~ 3974123 (+)
G187510 NA other downstream 2985907 5969045 ~ 5971732 (+)
G188149 NA other downstream 3825553 6808691 ~ 6809130 (+)

Expression


Co-expression Network