Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU210209 |
| length | 1072 |
| lncRNA type | inter_gene |
| GC content | 0.34 |
| exon number | 1 |
| gene id | G185101 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000040 |
| NCBI id | null |
| chromosome length | 6879596 |
| location | 2979373 ~ 2983138 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU210211 | lncRNA | upstream | 4163 | 2977121 ~ 2977904 (+) | True | G185103 |
| TU210233 | lncRNA | upstream | 94392 | 2887451 ~ 2887675 (+) | True | G185124 |
| TU210230 | lncRNA | upstream | 119299 | 2862239 ~ 2862768 (+) | True | G185121 |
| TU210161 | lncRNA | upstream | 128563 | 2849039 ~ 2853504 (+) | True | G185056 |
| TU210225 | lncRNA | upstream | 133250 | 2848552 ~ 2848817 (+) | True | G185116 |
| TU210253 | lncRNA | downstream | 24001 | 3007139 ~ 3007341 (+) | True | G185135 |
| TU210258 | lncRNA | downstream | 32768 | 3015906 ~ 3016163 (+) | True | G185140 |
| TU210272 | lncRNA | downstream | 47524 | 3030662 ~ 3030875 (+) | True | G185154 |
| TU210281 | lncRNA | downstream | 55649 | 3038787 ~ 3039010 (+) | True | G185163 |
| TU210291 | lncRNA | downstream | 62302 | 3045440 ~ 3045808 (+) | True | G185171 |
| CI01000040_02975088_02975548.mRNA | mRNA | upstream | 6121 | 2975088 ~ 2975946 (+) | True | CI01000040_02975088_02975548 |
| CI01000040_02889343_02891410.mRNA | mRNA | upstream | 90628 | 2889343 ~ 2891439 (+) | True | CI01000040_02889343_02891410 |
| CI01000040_02650575_02692600.mRNA | mRNA | upstream | 289396 | 2649543 ~ 2692671 (+) | True | CI01000040_02650575_02692600 |
| CI01000040_02609749_02611069.mRNA | mRNA | upstream | 370832 | 2609749 ~ 2611235 (+) | True | CI01000040_02609749_02611069 |
| CI01000040_02602517_02603172.mRNA | mRNA | upstream | 378444 | 2602357 ~ 2603623 (+) | False | CI01000040_02602517_02603172 |
| CI01000040_03168337_03198400.mRNA | mRNA | downstream | 185199 | 3168337 ~ 3198400 (+) | True | CI01000040_03168337_03198400 |
| CI01000040_03212701_03215022.mRNA | mRNA | downstream | 229563 | 3212701 ~ 3215168 (+) | True | CI01000040_03212701_03215022 |
| CI01000040_03271519_03276006.mRNA | mRNA | downstream | 287925 | 3271063 ~ 3276040 (+) | True | CI01000040_03271519_03276006 |
| CI01000040_03297317_03298657.mRNA | mRNA | downstream | 313317 | 3296455 ~ 3298896 (+) | True | CI01000040_03297317_03298657 |
| CI01000040_03761247_03762668.mRNA | mRNA | downstream | 778023 | 3761161 ~ 3762674 (+) | True | CI01000040_03761247_03762668 |
| TU208940 | other | upstream | 1745578 | 1230292 ~ 1236489 (+) | True | G184003 |
| TU208979 | other | upstream | 2003904 | 974113 ~ 974246 (+) | True | G184034 |
| TU208290 | other | upstream | 2705212 | 197712 ~ 276855 (+) | True | G183418 |
| TU208294 | other | upstream | 2817145 | 157543 ~ 164922 (+) | True | G183420 |
| TU208230 | other | upstream | 2921670 | 53691 ~ 60397 (+) | True | G183366 |
| TU210451 | other | downstream | 350440 | 3333578 ~ 3333983 (+) | True | G185296 |
| TU211111 | other | downstream | 755849 | 3738987 ~ 3739281 (+) | True | G185884 |
| TU211185 | other | downstream | 990627 | 3973765 ~ 3974123 (+) | True | G185947 |
| TU212953 | other | downstream | 2985907 | 5969045 ~ 5971732 (+) | False | G187510 |
| TU212954 | other | downstream | 2985907 | 5969045 ~ 5971732 (+) | False | G187510 |
