RNA id: TU210233


Basic Information

Item Value
RNA id TU210233
length 225
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G185124
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 2887451 ~ 2887675 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTCAATGGTTCACGTGACTTTGGCAGTTTGATAAAAGCTCCAAACCACTGATTCGAAATAAAAGATTCGTAAAGCTTCGAAGCTTCATGAAGCAGTGTTTTGAAATCGCCCATCACTAGATATTGTTGAATGAAGTTGTTATTCACTTTTTTTGGCACACAAAAAGTATTCTCGTCGCTTCATAACATTAAGGTTGAACCACTGTAGTCACATGAACTGTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210230 lncRNA upstream 24683 2862239 ~ 2862768 (+) True G185121
TU210161 lncRNA upstream 33947 2849039 ~ 2853504 (+) True G185056
TU210225 lncRNA upstream 38634 2848552 ~ 2848817 (+) True G185116
TU210223 lncRNA upstream 38927 2847832 ~ 2848524 (+) False G185115
TU210224 lncRNA upstream 38927 2847935 ~ 2848524 (+) True G185115
TU210211 lncRNA downstream 89446 2977121 ~ 2977904 (+) True G185103
TU210208 lncRNA downstream 91698 2979373 ~ 2982983 (+) False G185101
TU210209 lncRNA downstream 94392 2982067 ~ 2983138 (+) True G185101
TU210253 lncRNA downstream 119464 3007139 ~ 3007341 (+) True G185135
TU210258 lncRNA downstream 128231 3015906 ~ 3016163 (+) True G185140
CI01000040_02650575_02692600.mRNA mRNA upstream 194780 2649543 ~ 2692671 (+) True CI01000040_02650575_02692600
CI01000040_02609749_02611069.mRNA mRNA upstream 276216 2609749 ~ 2611235 (+) True CI01000040_02609749_02611069
CI01000040_02602517_02603172.mRNA mRNA upstream 283828 2602357 ~ 2603623 (+) False CI01000040_02602517_02603172
CI01000040_02558495_02563310.mRNA mRNA upstream 323905 2558383 ~ 2563546 (+) True CI01000040_02558495_02563310
CI01000040_02475489_02482435.mRNA mRNA upstream 404936 2475489 ~ 2482515 (+) True CI01000040_02475489_02482435
CI01000040_02889343_02891410.mRNA mRNA downstream 1668 2889343 ~ 2891439 (+) True CI01000040_02889343_02891410
CI01000040_02975088_02975548.mRNA mRNA downstream 87413 2975088 ~ 2975946 (+) True CI01000040_02975088_02975548
CI01000040_03168337_03198400.mRNA mRNA downstream 280662 3168337 ~ 3198400 (+) True CI01000040_03168337_03198400
CI01000040_03212701_03215022.mRNA mRNA downstream 325026 3212701 ~ 3215168 (+) True CI01000040_03212701_03215022
CI01000040_03271519_03276006.mRNA mRNA downstream 383388 3271063 ~ 3276040 (+) True CI01000040_03271519_03276006
TU208940 other upstream 1650962 1230292 ~ 1236489 (+) True G184003
TU208979 other upstream 1909288 974113 ~ 974246 (+) True G184034
TU208290 other upstream 2610596 197712 ~ 276855 (+) True G183418
TU208294 other upstream 2722529 157543 ~ 164922 (+) True G183420
TU208230 other upstream 2827054 53691 ~ 60397 (+) True G183366
TU210451 other downstream 445903 3333578 ~ 3333983 (+) True G185296
TU211111 other downstream 851312 3738987 ~ 3739281 (+) True G185884
TU211185 other downstream 1086090 3973765 ~ 3974123 (+) True G185947
TU212953 other downstream 3081370 5969045 ~ 5971732 (+) False G187510
TU212954 other downstream 3081370 5969045 ~ 5971732 (+) False G187510

Expression Profile