RNA id: TU210258


Basic Information

Item Value
RNA id TU210258
length 258
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G185140
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 3015906 ~ 3016163 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTCAAAATGTCTCACTTTCAACATTTGATATGTTATCTATATTCTATTGTGAATAAAATATAAGTTTATGAGATTTGTAAATTATTGCATTCCTTTTTTATTCACAATTTGTACAGTGTCCCAACTTTTTTGGAATCGGGTTTGTACTTTGGATGTCATTTCTTTCTTTTTTATTATTATTTGGGCCTTTGGACAAAAAAAATGACCCGTCACGTCATTGACGTCATTGAGTTTTTTCCTCAGATTTATCAGGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210253 lncRNA upstream 8565 3007139 ~ 3007341 (+) True G185135
TU210209 lncRNA upstream 32768 2982067 ~ 2983138 (+) True G185101
TU210208 lncRNA upstream 32923 2979373 ~ 2982983 (+) False G185101
TU210211 lncRNA upstream 38002 2977121 ~ 2977904 (+) True G185103
TU210233 lncRNA upstream 128231 2887451 ~ 2887675 (+) True G185124
TU210272 lncRNA downstream 14499 3030662 ~ 3030875 (+) True G185154
TU210281 lncRNA downstream 22624 3038787 ~ 3039010 (+) True G185163
TU210291 lncRNA downstream 29277 3045440 ~ 3045808 (+) True G185171
TU210383 lncRNA downstream 98930 3115093 ~ 3118468 (+) True G185235
TU210301 lncRNA downstream 109280 3125443 ~ 3149816 (+) False G185175
CI01000040_02975088_02975548.mRNA mRNA upstream 39960 2975088 ~ 2975946 (+) True CI01000040_02975088_02975548
CI01000040_02889343_02891410.mRNA mRNA upstream 124467 2889343 ~ 2891439 (+) True CI01000040_02889343_02891410
CI01000040_02650575_02692600.mRNA mRNA upstream 323235 2649543 ~ 2692671 (+) True CI01000040_02650575_02692600
CI01000040_02609749_02611069.mRNA mRNA upstream 404671 2609749 ~ 2611235 (+) True CI01000040_02609749_02611069
CI01000040_02602517_02603172.mRNA mRNA upstream 412283 2602357 ~ 2603623 (+) False CI01000040_02602517_02603172
CI01000040_03168337_03198400.mRNA mRNA downstream 152174 3168337 ~ 3198400 (+) True CI01000040_03168337_03198400
CI01000040_03212701_03215022.mRNA mRNA downstream 196538 3212701 ~ 3215168 (+) True CI01000040_03212701_03215022
CI01000040_03271519_03276006.mRNA mRNA downstream 254900 3271063 ~ 3276040 (+) True CI01000040_03271519_03276006
CI01000040_03297317_03298657.mRNA mRNA downstream 280292 3296455 ~ 3298896 (+) True CI01000040_03297317_03298657
CI01000040_03761247_03762668.mRNA mRNA downstream 744998 3761161 ~ 3762674 (+) True CI01000040_03761247_03762668
TU208940 other upstream 1779417 1230292 ~ 1236489 (+) True G184003
TU208979 other upstream 2037743 974113 ~ 974246 (+) True G184034
TU208290 other upstream 2739051 197712 ~ 276855 (+) True G183418
TU208294 other upstream 2850984 157543 ~ 164922 (+) True G183420
TU208230 other upstream 2955509 53691 ~ 60397 (+) True G183366
TU210451 other downstream 317415 3333578 ~ 3333983 (+) True G185296
TU211111 other downstream 722824 3738987 ~ 3739281 (+) True G185884
TU211185 other downstream 957602 3973765 ~ 3974123 (+) True G185947
TU212953 other downstream 2952882 5969045 ~ 5971732 (+) False G187510
TU212954 other downstream 2952882 5969045 ~ 5971732 (+) False G187510

Expression Profile