G185235


Basic Information

Item Value
gene id G185235
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 3115093 ~ 3118468 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU210383
TTGAAAATATTATGTATTCAAAACAATATATTCAATTAAATAAGTTTTTTCTAAGACAATAATAAAATATTATTTCAAACTACAATTTCATAAACAAAAATGTTATACTTTAGTGAGGCTTTTTTCTTCATTATGATATCAGAAAAGTTTTTTTTTTTTTTTGGGTTAAGTAAAAATCTATTGAACATTTAGTAAAAATCTATTAAACATTAAGTAATACATTATTATAACATTTATTAATACATTTAGTAATACATTATCATTACAAAAAATTTTATTTGTTAGAATTAGTTAATGCACTGTAAACTAAGAGAGAGAGAGGGGATTGTGTCGGTGTGTGAGGTGGGGGGATTTGTGTGTGGCTTGTGGACATTTTATATTGATGAATTGGTATCTTATCTTTTCACAGACATGTACACTATATTGCCAAAAGTATTGGGACACCCCTCAAAATCATTGAATTCAGGTGTTCCAATCACTTCCATGGCCACAGGTGTATAAAATCAAGCACCTAGGCATGCAGACTGCTTCTACAAACATTTGTGAAAGAATGGGTCGCTTTCAGGAGCTCAGTGAAGTCAAGCGTGGCACCGTGATAGGTTACCACCTGTGCAATAAGTCCATTCGTGAAATTTCCTCACTACTAAATATTCCACAGTCAGCTGTTAGTGGTATTATAACAAAGTGGAAGCAATTGGGAACAACAGCAACTCAGCCGTGAAGTGGTAAGCCAGGTAAAATCACAGAGCGGGGTCAGCGCATGCTGAGGCTCACAGTGCGCAGAAGTCGCCAACTTTCTGCAGAGTCAATATCTACAGACCTCTAAACTTCATGTGGCCTTCAGATTAGCTCAAGAACAGTGCGTACAGAGCTGCATGGAATGGGTTTCCATGGCCGAGCAGTTGCATCCAAGCCTTACATCACCAAGTGCAATGCAAAGCGTGGGATGGACTCTAGAGCAGTGGAGACGTGTTCTCTGGAGTGACGAATCGCGCTTCTCTGTCTGGCAATCTGATGGAAAAGTCTGGGTTTGGCGGTTGCCAGGAGAATGGTACTTGCCTGACTGCATTGTGCCAAGTGTAAAGTTTGGTGGAGGGAGGGTTATGGTGTGGGGTTGTTTTTCAGGGGTTGGGCTTGGCCCCTTAGTTCCAGTGAAAGGAACTCTTAATGCTTCAGCATAGCAAGACATTTTGGACAATTTCATGCTCCCAACTTTGTGGGAACAGTTTGGGGATGGCCCCTTCCTGTTCCAACGTGACTGCGCACCAGTGCACAAAGCAAGGTCCATAAAGACATGGATGAGCGAGTTTGGTGTGGAGGAACTTGACTGGCCTGCACAGAGTCCTGACCTCAACCCGATAGAACACCTTTAGGATGAATTAGAGCGGAGACTGCGAGCCAGGCCTTCTCGTCCAACATCAGTGCCTGACCTCACAAATGTGTTTCTAGAAGAATGGTCCAAAATTCCCATAAACACACTCCTAAACCTTGTGGAAAGCCTTCCCAGAAGAGTTAAAGCTGTAATAGCTGCAAAGGGTGGGCCAACTCCATATTAAACCCTACGGATTAAGAATGGGATGTCATTAAAGTTCATGTGCATGTAAAGGCAGGCGTCCGAAAAACTTTTGGCAATGTAGTGTATGTAGCAGATGGTCACTGACGTTCCCAGAGTTAATGTTTACATTTGCTAGCCGAGCACGCAAGCAACTATAGCTACTCACCTGGTACGTTTAAAATCGATGTGATTTCTCCCCAGCTGTTCTCTTTATCGGTGCGGTTGTGGTATAGTTTTGAAGATACTTTGTATAGGCAGTCATGTTGTAGCCTTGCCACATATCAACAAGTCGCTCCTCCATCTCTGAAGTCCAGCGGATCCATGCTGCAGGTTTCACAGTCGCCATTTCAAAATATCCGTCACTTCCGTCTCCTTGTAGACTTGTTTCTTATTGGCTATTGTGACAGTACTGTCGTAATCATAGTCTTGATTATCCCGATTTAAAAAATCCTAAATATCAAACATGTTTGATATGATTGGGGCGGCCCCGATTTGTGTGAGAGTAGATCGGGAGGTGCAAGATTCGATCTGTGAACGCCTTACATTATCAGATAATGCACCAAACATCAGAACCAATCAAGCTCCTTGACAAGACTTTTTTCTCTGATTCTCAGAAGGGGAAAATCAGGGATAAATCAGCCTAAAACTCCTGTAGTGTGAGCACAGATTTACATGAACAAACAACCAACAGTTGTATTTGTATTAACTAAAGTTAAGAAAGATGAATAAATACTGTCACAAATGTATTGCTCATTGTTGATGTTAGTTAATACATTAAAGGTGCAATGTGTAAATTTAAGGAGGATCTATTGACAGATATGTAATATAATATACATAACTATGTTTTCAGTGGTGTATAAAGACCTTACATAATGAGCCATTAGGTTTTTATTACTTTAGAATGAGCCATTTCTATCTACATACACCATGGGTCCCCTTACATGTTAAGAGGCCATTTACACTACACCGTTTTTAACTAAACATGGAAAACTTTTTATGTGTTTTGGCTGTCCATTTACACGACAATGGCGTTTTGGTTGCCTGAAAACGCAAACTTTTGAAAACGGGTTTCAAAGTGCAAGTTTTTGAAAATGGTCTCTGTGTAAACAACAAAAATGCGCATCTGTGAAAATGATGACGCCATGCACATGCGCATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210383 True 2712 lncRNA 0.40 2 3115093 3118468

Neighbor

gene id symbol gene type direction distance location
CI01000040_02975088_02975548 NA coding upstream 139147 2975088 ~ 2975946 (+)
CI01000040_02889343_02891410 KCTD16B, KCTD16 coding upstream 223654 2889343 ~ 2891439 (+)
CI01000040_02650575_02692600 NA coding upstream 422422 2649543 ~ 2692671 (+)
CI01000040_02609749_02611069 ARHGAP26 coding upstream 503858 2609749 ~ 2611235 (+)
CI01000040_02602517_02603172 NA coding upstream 511470 2602357 ~ 2603623 (+)
CI01000040_03168337_03198400 RBM27 coding downstream 49869 3168337 ~ 3198400 (+)
CI01000040_03212701_03215022 POU4F3 coding downstream 94233 3212701 ~ 3215168 (+)
CI01000040_03271519_03276006 NA coding downstream 152595 3271063 ~ 3276040 (+)
CI01000040_03297317_03298657 DRD1B, DRD1 coding downstream 177987 3296455 ~ 3298896 (+)
CI01000040_03761247_03762668 BOD1, FA44B coding downstream 642693 3761161 ~ 3762674 (+)
G185171 NA non-coding upstream 69285 3045440 ~ 3045808 (+)
G185163 NA non-coding upstream 76083 3038787 ~ 3039010 (+)
G185154 NA non-coding upstream 84218 3030662 ~ 3030875 (+)
G185140 NA non-coding upstream 98930 3015906 ~ 3016163 (+)
G185135 NA non-coding upstream 107752 3007139 ~ 3007341 (+)
G185175 NA non-coding downstream 6975 3125443 ~ 3149816 (+)
G185178 NA non-coding downstream 9343 3127811 ~ 3133688 (+)
G185287 NA non-coding downstream 199333 3317801 ~ 3318156 (+)
G185290 NA non-coding downstream 204385 3322853 ~ 3323253 (+)
G185292 NA non-coding downstream 205498 3323966 ~ 3324197 (+)
G184003 NA other upstream 1878604 1230292 ~ 1236489 (+)
CI01000040_00977184_00977458 NDUA2, NDUFA2 other upstream 2136930 977184 ~ 978163 (+)
CI01000040_00240852_00305487 GABRB2 other upstream 2838238 240849 ~ 313275 (+)
G183420 NA other upstream 2950171 157543 ~ 164922 (+)
G183366 NA other upstream 3054696 53691 ~ 60397 (+)
G185296 NA other downstream 215110 3333578 ~ 3333983 (+)
G185884 NA other downstream 620519 3738987 ~ 3739281 (+)
G185947 NA other downstream 855297 3973765 ~ 3974123 (+)
G187510 NA other downstream 2850577 5969045 ~ 5971732 (+)
G188149 NA other downstream 3690223 6808691 ~ 6809130 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G12228 NA unknown NC_047595.1 CM018541.1 22578792 ~ 22639022 (+)